Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0904
(354 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069793-1|AAL39938.1| 894|Drosophila melanogaster SD03467p pro... 64 5e-11
AE014134-605|AAF51106.1| 894|Drosophila melanogaster CG8843-PA ... 64 5e-11
AY118441-1|AAM48470.1| 961|Drosophila melanogaster SD06668p pro... 28 3.9
AE014297-3590|AAF56321.3| 961|Drosophila melanogaster CG6695-PA... 28 3.9
AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma pi... 27 5.2
AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision rep... 27 5.2
AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB... 27 5.2
AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA... 27 5.2
>AY069793-1|AAL39938.1| 894|Drosophila melanogaster SD03467p
protein.
Length = 894
Score = 64.1 bits (149), Expect = 5e-11
Identities = 36/101 (35%), Positives = 54/101 (53%)
Frame = +1
Query: 25 LRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKIEE 204
LR R AY +L+ LDLPS+ L I++++I + R+ + +RA R K L +ETW++
Sbjct: 516 LRFTRIAYATLISLDLPSEALDIIQKLIDEVRLFCFSIIFKRATDRCKKLGSQETWEL-G 574
Query: 205 FTEYGAITKLPHLLETYVKEALSDIHKCVWCGGRRESAALD 327
EY T LP LET + E L ++ RE L+
Sbjct: 575 VEEYPGATLLPAALETLLIETLDEVQSVCMQRETREGNLLE 615
>AE014134-605|AAF51106.1| 894|Drosophila melanogaster CG8843-PA
protein.
Length = 894
Score = 64.1 bits (149), Expect = 5e-11
Identities = 36/101 (35%), Positives = 54/101 (53%)
Frame = +1
Query: 25 LRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKIEE 204
LR R AY +L+ LDLPS+ L I++++I + R+ + +RA R K L +ETW++
Sbjct: 516 LRFTRIAYATLISLDLPSEALDIIQKLIDEVRLFCFSIIFKRATDRCKKLGSQETWEL-G 574
Query: 205 FTEYGAITKLPHLLETYVKEALSDIHKCVWCGGRRESAALD 327
EY T LP LET + E L ++ RE L+
Sbjct: 575 VEEYPGATLLPAALETLLIETLDEVQSVCMQRETREGNLLE 615
>AY118441-1|AAM48470.1| 961|Drosophila melanogaster SD06668p
protein.
Length = 961
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/58 (34%), Positives = 22/58 (37%)
Frame = +3
Query: 84 TEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHRIWSHH*TASSIRDVR 257
T+HS R R R R P QRSR + R R SH S RD R
Sbjct: 829 TQHSRRSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRR--SHSRRRSGSRDRR 884
>AE014297-3590|AAF56321.3| 961|Drosophila melanogaster CG6695-PA,
isoform A protein.
Length = 961
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/58 (34%), Positives = 22/58 (37%)
Frame = +3
Query: 84 TEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHRIWSHH*TASSIRDVR 257
T+HS R R R R P QRSR + R R SH S RD R
Sbjct: 829 TQHSRRSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRR--SHSRRRSGSRDRR 884
>AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 301 TLEISDLTEYGALTLITHFATLVSTYTK 328
>AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision repair
protein ERCC2/XPD protein.
Length = 745
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 361 TLEISDLTEYGALTLITHFATLVSTYTK 388
>AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB,
isoform B protein.
Length = 745
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 361 TLEISDLTEYGALTLITHFATLVSTYTK 388
>AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA,
isoform A protein.
Length = 769
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 187 TWKIEEFTEYGAITKLPH---LLETYVK 261
T +I + TEYGA+T + H L+ TY K
Sbjct: 385 TLEISDLTEYGALTLITHFATLVSTYTK 412
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,899,364
Number of Sequences: 53049
Number of extensions: 270152
Number of successful extensions: 1075
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 859222404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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