Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0904
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    28   1.6  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   1.6  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    28   2.2  
AC084153-10|AAK84591.1|  184|Caenorhabditis elegans Hypothetical...    27   5.0  
Z81133-1|CAB03441.1|  170|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical p...    26   8.7  
AY728064-1|AAU43725.1|  277|Caenorhabditis elegans cadmium-induc...    26   8.7  
AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy pro...    26   8.7  
AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 208 TEYGAITKLPHLLETYVKEALSDI-HKCVWCGGRRESAALDAGPLHEHT 351
           TE G   +LP L + Y  E +  + +   WCG ++E+AA+      EH+
Sbjct: 764 TENGEEPRLPGL-QQYTNEQIFFVSYAHFWCGKKKEAAAMQQVLTDEHS 811


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 25  LRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKIEE 204
           L HL E  ++L    LP  P   V R+I+D R H  +V L+R +  + G+  + T+    
Sbjct: 433 LVHLVEL-QNLFGAQLPKMPKEYVTRLIFDSR-HQNMVILKRDMGVIGGICFR-TFPSRG 489

Query: 205 FTE--YGAITKL 234
           F E  + AIT +
Sbjct: 490 FVEIVFCAITAM 501


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +1

Query: 178 DKETWKIEEFTEYGAITKLPHLLETYVKEALSDIHKCVWCGGRRESAALD 327
           DK    +  F       K  HL+   + + +S  H   W GG R++  ++
Sbjct: 128 DKHGASLTGFQNANERLKAAHLIRALINKKVSGAHAVTWIGGLRKARCVN 177


>AC084153-10|AAK84591.1|  184|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.2 protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 344 SCSGPASSAALSRRPPHHTHL*ISDSASFT 255
           +C  P  SAA S++PP HT L    + SFT
Sbjct: 98  NCGTPNVSAA-SKQPPLHTSLRTHQTTSFT 126


>Z81133-1|CAB03441.1|  170|Caenorhabditis elegans Hypothetical
           protein T28B8.1 protein.
          Length = 170

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = +3

Query: 69  SALTATEHSGARDIRLPRARHGR---VPPASSQ------EGQRSRRQ-GNMEDRRVHRI 215
           S + A   SG +D+R  ++ HG    VP AS        + QRS++  G   DR+ HR+
Sbjct: 105 SVMFADPDSG-KDVRTFKSTHGSGRSVPTASGSIRRLNTQSQRSKKSSGKSNDRKTHRV 162


>Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.11 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 219 SIFGELFDLPCFLV 178
           +IFG+LF+LP FLV
Sbjct: 157 NIFGDLFNLPSFLV 170


>AY728064-1|AAU43725.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-4 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 219 SIFGELFDLPCFLV 178
           +IFG+LF+LP FLV
Sbjct: 157 NIFGDLFNLPSFLV 170


>AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy protein
            9 protein.
          Length = 947

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 78   TATEHSGARDIRLPRARHGRVP-PASSQEGQRSRRQGNMEDRRVH 209
            +A EH    +   P A    +P P+SS+  QRSR   N + R+++
Sbjct: 884  SAAEHKMEHETPEPLAELPDLPGPSSSEHQQRSRLVPNTQHRQIN 928


>AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical
           protein T22H9.2a protein.
          Length = 880

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 78  TATEHSGARDIRLPRARHGRVP-PASSQEGQRSRRQGNMEDRRVH 209
           +A EH    +   P A    +P P+SS+  QRSR   N + R+++
Sbjct: 817 SAAEHKMEHETPEPLAELPDLPGPSSSEHQQRSRLVPNTQHRQIN 861


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,933
Number of Sequences: 27780
Number of extensions: 127549
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)