Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0904
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    20   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 KVSPTRKHGRSKSSPNMEPSLNCLIY 244
           ++SP  ++  SKSS    PS N L Y
Sbjct: 522 EISPHHEYYDSKSSTETPPSYNQLNY 547


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 250 TYVKEALSDIHKCVWCG 300
           TY+     D+H  +W G
Sbjct: 49  TYLHLLYQDVHVMIWIG 65


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +3

Query: 60  EIGSALTATEHSGARDIRLPRAR 128
           ++      +++ G RD+R+P  R
Sbjct: 82  DVNMRWNVSDYGGVRDLRIPPHR 104


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 240 MRQFSDGSIFGELFDLPCFLV 178
           +R    G+I  +LF  PC L+
Sbjct: 62  LRLLLQGNINNQLFQTPCELL 82


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 135 RVPPASSQEGQRSRRQ 182
           + PP+  + G+R RR+
Sbjct: 398 QTPPSRKESGRRRRRR 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,012
Number of Sequences: 438
Number of extensions: 1469
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)