Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0904
(354 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A... 32 0.096
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 32 0.096
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A... 31 0.22
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 30 0.39
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ... 29 0.89
At3g02630.1 68416.m00254 acyl-[acyl-carrier-protein] desaturase,... 28 2.1
At2g22350.1 68415.m02652 RNase H domain-containing protein low s... 27 3.6
At1g50730.1 68414.m05705 expressed protein 27 3.6
At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t... 27 4.7
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR... 27 4.7
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 27 4.7
At1g55300.1 68414.m06317 TATA-binding protein-associated factor ... 26 8.3
>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
(PP2A) 65 KDa regulatory subunit A identical to protein
phosphatase 2A 65 kDa regulatory subunit (pDF1)
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 32.3 bits (70), Expect = 0.096
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 19 ANLRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKI 198
A + HL + SLLK + P L+I+ ++ +V G+ + Q L + LA+ W++
Sbjct: 354 ATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 32.3 bits (70), Expect = 0.096
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 19 ANLRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKI 198
A + HL + SLLK + P L+I+ ++ +V G+ + Q L + LA+ W++
Sbjct: 354 ATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413
>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit A (RCN1) identical to
phosphoprotein phosphatase 2A, regulatory subunit A
GI:1262171 from [Arabidopsis thaliana]
Length = 588
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 19 ANLRHLREAYESLLKLDLPSQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLADKETWKI 198
+ + HL + SLLK + P L+I+ ++ +V G+ + Q L + LA+ W++
Sbjct: 354 STIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 3 AGPARCQSAAPQGSLRVSAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQ 182
A PA +A + VSA G+ T +H G+ + L R+ +S +GQ RR+
Sbjct: 68 AAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSGSSS-SSSSEDDGQGGRRK 126
Query: 183 GNMEDR 200
+++++
Sbjct: 127 KSIKEK 132
>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
alpha-glucan phosphorylase, L isozyme 1 precursor
GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
691-695 (1989))
Length = 962
Score = 29.1 bits (62), Expect = 0.89
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 142 LQRALKRVKGLADKETWKIEEFT-EYGAITKLPHLLETYVKEALSDI 279
L R L +KGL+ ++ WKI + T Y T LP LE + E + +
Sbjct: 415 LMRILMDLKGLSWEDAWKITQRTVAYTNHTVLPEALEKWSLELMEKL 461
>At3g02630.1 68416.m00254 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Sesamum
indicum GI:575942, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 396
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 136 RPCRARGSRISRAPLCSVAVRADPISAETRRL 41
RPC+ARGSR SR + S A R+L
Sbjct: 18 RPCQARGSRSSRVSMASTIRSATTEVTNGRKL 49
>At2g22350.1 68415.m02652 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 321
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 76 SQPLSIVERVIYDYRVHGMVVFLQRALKRVKGLAD 180
S PLS + R+ YD+ G +V + + LAD
Sbjct: 245 SHPLSFLLRLCYDFLSKGWIVRISHVYREANRLAD 279
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 154 LKRVKGLADKETWKIEEFTEYGAITKLPHLLETYVKEALSDIHKCVWCGGRRESAAL 324
+K +K + D + + Y IT LL + V+ A+ I KC++ GR+E+ L
Sbjct: 338 IKCIKDIEDVLAPVLVDKEGYSYITDDKKLLFSLVEPAIEYIMKCLFLTGRQENNVL 394
>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
synthetase, mitochondrial precursor (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
Length = 709
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 91 IVERVIYDYRVHGMVVFLQRALKRVKGLADKETW 192
++E + Y Y+V G L+ + + K L D ETW
Sbjct: 473 VLEFIDYVYKVFGFTYELKLSTRPEKYLGDLETW 506
>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1197
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 177 RQGNMEDRRV-HRIWSHH*TASSIRDVREGGA 269
R+ DR+ HR+W HH T ++ D +GG+
Sbjct: 525 REATATDRKGRHRLWHHH-TIIAVLDKNKGGS 555
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 174 RRQGNMEDRRVHRIWSHH*TASSIRDVREGGAV 272
RR + R HR+W H ++++ EG V
Sbjct: 517 RRAYAQDGREPHRLWHHQDITDVLKNIEEGAEV 549
>At1g55300.1 68414.m06317 TATA-binding protein-associated factor
TAFII55 family protein contains Pfam profile: PF04658
TAFII55 protein conserved region
Length = 203
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 54 SAEIGSALTATEHSGARDIRLPRARHGRVPPASSQEGQRSRRQGNMEDRRVHRI 215
+A+IG + E G RHG PP +R RR+ ++ V R+
Sbjct: 78 TADIGQMIMVRE-PGDPAPNTVEYRHGLTPPMKDARKRRFRREPDLNPELVQRV 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,395
Number of Sequences: 28952
Number of extensions: 122129
Number of successful extensions: 421
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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