Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0903
         (505 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   2.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   4.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.3  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/52 (19%), Positives = 27/52 (51%)
 Frame = -2

Query: 399 KFRPHDKIIEFSIGLW*VEALVNRLVIAILISFFAEGKRVRFQIVFVTLVQE 244
           +FR +     F   +  +  L +  ++ I+ + F + KR+R  ++ ++ ++E
Sbjct: 66  QFRSYSNFSVFLFDIITIVTLTSTSILLIVNAVFVKEKRIRTLLIKLSEIKE 117


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 457 YVVVSRMQKRVLPLPVVRHKVQAS**DYRVLHWTV 353
           YV+++   + +   P +RH++Q     YR+L  T+
Sbjct: 592 YVLLNEKVEAIKTSPKMRHELQKLAQVYRILGETI 626


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 184 CHLCCSKASALR*QQGPL 131
           C LC    S+ R  QGPL
Sbjct: 172 CDLCQKTKSSNRPHQGPL 189


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 190 WYCHLCCS 167
           + CH+CCS
Sbjct: 648 YICHVCCS 655


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 60  ILFYCPSTILT 92
           +LFYCP  I T
Sbjct: 83  LLFYCPFIIFT 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,182
Number of Sequences: 336
Number of extensions: 2415
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)