Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0903
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 3.7
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 6.5
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 6.5
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 25 6.5
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 6.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 6.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.5
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 8.5
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 25 8.5
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.5
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 265 NDLEPYPLALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMRPEL--YGEPPAMEGLASA 438
NDL P + EE NQ+G +DQ F Q+ N+ + + + EP G +
Sbjct: 31 NDLHP-TMFEGEESNQNGGSVLIDQAFQDIQNPNVNSNMHLENQFQHFHEPNKESGAFGS 89
Query: 439 F 441
+
Sbjct: 90 Y 90
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 6.5
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +3
Query: 75 PSTILTDRDYVIIFPNRYYSGPCCQRSADAFEQQRWQYHQ*TARKLGSNKR**PISL-LE 251
PS T + + R P C RSA + R++YH ++ L + P SL
Sbjct: 622 PSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYHTSLSKSLEHSST--PASLQAT 679
Query: 252 QE*QKRFGTLPACPQRRRK 308
+ F P PQ +K
Sbjct: 680 KTPSPSFVLEPGIPQEYKK 698
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 208 NWDQTKDDNRSLFLNKSDKNDLE 276
NW + D SL +KNDLE
Sbjct: 546 NWQKETDKKNSLVNEAEEKNDLE 568
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 187 TISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQ 327
T ++ P ++ T DN ++ + D EPY L L + Q+ YD+
Sbjct: 24 TTNKFPSDYVPTVFDNYAVTVMIGD----EPYTLGLFDTAGQEDYDR 66
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 238 SLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRF 345
SL ++ KND + +PL + N + Y +++ +F
Sbjct: 20 SLQSSRKRKNDFDDFPLNKGLKTNNNDYSGSIEPKF 55
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 154 VPTPSNNKDGSTISELPENWDQTK 225
V PSN+ D + ++E P N ++TK
Sbjct: 546 VTEPSNDADKAIVAEGPNNEEETK 569
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 402 WRTTGNGRTRFC 437
WRTT +G T FC
Sbjct: 857 WRTTSSGETSFC 868
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 196 ELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSPQS 360
+L E+ Q DD+ + + + ++ DL+ A ++ D++ +Q DS S
Sbjct: 4298 DLTESQSQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNS 4352
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 273 GTLPACPQRRRKSRWL*PNG*PTLRLTTV 359
GT+P CP R + S + N P TT+
Sbjct: 345 GTIPECPSRNKTSWAVSANAFPVTPNTTI 373
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 286 LALSEEGNQDGYDQTVDQRFDSPQSNGELDNLIMR 390
L + E N+ Y+Q V + + + ELDN +R
Sbjct: 49 LLILREANRKSYEQLVQAKTITAEHKSELDNARIR 83
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 8.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 238 IGYHLLFDPN 209
+GYHL FDPN
Sbjct: 1038 LGYHLTFDPN 1047
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,252
Number of Sequences: 5004
Number of extensions: 41573
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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