Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0903
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204 29 2.1
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 29 2.1
08_02_1623 - 28314402-28315094 29 2.8
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368... 29 2.8
11_02_0040 - 7665220-7666656 28 3.7
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 3.7
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 28 4.9
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 27 6.5
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 27 8.6
>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
Length = 403
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 112 FSLTAITAVLAVSAVPTPSNNKDGSTISEL-PENWDQTKDDNRSLFLNKSDKNDLEP 279
F L + +A + S K G T + PE+ +QTKDDN + L++ +K L P
Sbjct: 341 FGLICLLFTIAGGVLYQQSVTKKGITAPQHEPESSEQTKDDNEGIELDE-EKQSLVP 396
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +1
Query: 163 PSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQR 342
P N + E E W D+++ +L+K+ + E + S+E N G +Q
Sbjct: 115 PDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEYHNGERSDENNVGG--NAGEQE 172
Query: 343 FDSPQSNG 366
D P G
Sbjct: 173 VDQPPKKG 180
>08_02_1623 - 28314402-28315094
Length = 230
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Frame = +1
Query: 97 VTMLLFSLTA-ITAVLAVSAVPTP------SNNKDGSTISELPENWDQTKDDNRSLFLNK 255
+ +LL + TA A +V TP SNN +T + Q DDN +L +
Sbjct: 108 LNLLLAAATAGAPPAAATPSVATPCSTNDDSNNSSSTTHQQQLTTMLQLDDDNYTLQPSS 167
Query: 256 SDKNDLEPYPLAL--SEEGNQDGYDQ 327
SD+ D E Y L +E+ +G+ +
Sbjct: 168 SDQEDFETYVTRLPKAEDFGLEGFQE 193
>03_06_0156 +
32035503-32035769,32036436-32036539,32036734-32036844,
32036923-32037073,32037614-32037888,32037998-32038211
Length = 373
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 196 ELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQR 342
+LP NW + D N + KN L EEGN D + +DQ+
Sbjct: 320 KLPSNWKRA-DANSDILNYNGPKNVCSEGGRQLQEEGNGDEWQLYLDQK 367
>11_02_0040 - 7665220-7666656
Length = 478
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 497 AAPAPPTFVPLPLLRRCKSNAEXXXXXXXXXXXXXGLMIRLSSSPL 360
AAP PPT P PLL+R + L+ RL + PL
Sbjct: 198 AAPPPPTSRPPPLLKRWSPEEDDDATVVLPYADVSELIERLDTPPL 243
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 178 DGSTISELPENWDQTKDDNRSLFLNKSDKN----DLEPYPLALSEEGNQDG 318
+GS++S P+ D T+D + ++F +K D N DL +P A+ +E G
Sbjct: 819 EGSSLSRSPQTVDTTRDGDVTMF-DKVDINKGHIDLNFHPTAVRDEERHGG 868
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 155 CRRLRTTKMAVPSVNCQKIGIKQKMITDLSS*TRVTKTIWNLTRLPSAKKEIKMAMTK 328
C R+R+ K +N + ++ ITD + ++ + I +TRLP IK A K
Sbjct: 635 CMRIRSDKSTPNDINTYRKVMRS--ITDNITEEKLLEEIHEITRLPMYADRIKQAQAK 690
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 142 AVSAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSD 261
A +A+P S++ S + E WD +D+ + LN++D
Sbjct: 129 AGAAIPGLSSSAAASAAAAGSEEWDSDSEDDIQIVLNETD 168
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 27.1 bits (57), Expect = 8.6
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -1
Query: 436 QKRVLPLPVVRHKVQAS**DYRVLHWTVVS-RSVGQPFGHSHLDFLLR*GQAGKVPNRFC 260
+ RVLP + +H VQ + DYRV + + + + + L F + G++ +
Sbjct: 203 ENRVLPALLKKHVVQLTKFDYRVSNRLETNLQKLRCRVNYHALQFTDPILKMGEMLVQRM 262
Query: 259 HSCSRREIGYHLLFDPNFLA 200
+ S R I HL F+P+ LA
Sbjct: 263 RAKSGRFIALHLRFEPDMLA 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,596
Number of Sequences: 37544
Number of extensions: 291176
Number of successful extensions: 829
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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