Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0903
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23) 29 1.6
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 29 2.9
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15) 28 3.8
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5) 28 5.0
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 27 6.6
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2) 27 6.6
SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 27 8.8
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = +1
Query: 169 NNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFD 348
+N DG S+ N D DDN S N D ND E+ + D D D D
Sbjct: 27 DNDDGDDYSDSDHNDDDDDDDNDSDNNNVDDDNDGNDDDDDSDEDYDDDDNDDNDDDNDD 86
Query: 349 SPQSNGELDN 378
+ N + D+
Sbjct: 87 NDDDNDDNDD 96
>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
Length = 1531
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 123 RYYSGPCCQRSADAFEQQRWQYH 191
RY+SGPCC RS + +++ + H
Sbjct: 1498 RYFSGPCCNRSIASKIREKTEVH 1520
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +1
Query: 172 NKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQD------GYDQTV 333
+++ STI P+ + +++D+R N D P + S+E N++ ++
Sbjct: 640 SRNSSTIESSPKRFSWSQEDSRVQMRNSPAVTDGAPNRFSWSQENNKERSRNSSSTSESS 699
Query: 334 DQRFDSPQSNGELDNLIMRPELYGEPP-AMEGLASAFDLQRRKRGS 468
+RF Q N + D + P+L + P EG ++R R +
Sbjct: 700 PKRFSWSQENSK-DVVFAGPDLPADNPFNREGFGRQSMSEKRGRAA 744
>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
Length = 1575
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 438 CRSESFHCRWFAIKFRPHDKIIEF 367
C F C +F + FRP++K++ F
Sbjct: 72 CEKRLFDCCFFLVTFRPNNKLVVF 95
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 154 VPTPSNNKDGSTISELPENWDQTKDDNRSL--FLNKSDKNDLEPYPLALSEEGNQDGYDQ 327
V S+N D S +N D+ ++N + NKS+ ND + N DG+D
Sbjct: 328 VDNNSHNNDEKNKSNSNDNNDENNNNNSNNKDSNNKSNNNDNKSNSNNTENNSNNDGFDN 387
Query: 328 TV 333
++
Sbjct: 388 SI 389
>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
Length = 126
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 175 KDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSP 354
KDG T + W + N+S+ K +K ++E + + Q Q ++++ D
Sbjct: 50 KDGKTKDGKTKRWKNKRWKNKSMEKQKMEKQEMEKQEMEKQKMEEQKMEKQKMEKQKDGK 109
Query: 355 QSNGE 369
+G+
Sbjct: 110 TKDGK 114
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 262 KNDLEPYPLALSEEGNQDGYDQTVDQRF 345
+ L Y LS + +QDGYDQ + + F
Sbjct: 350 RKKLRGYKTRLSSQNSQDGYDQGMAENF 377
>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
Length = 228
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 178 DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQ 339
D S +SE + DQ DD + KSD++D+ P ++ + DG D +++
Sbjct: 77 DESDVSETDPSKDQYDDDGDDNEIEKSDESDV-PESDPSKDQYDDDGDDNELEK 129
>SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 148 SAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNK 255
S PT ++ K + + +N+ T DD S F+ K
Sbjct: 15 STTPTKTSKKQNLKATPMKQNYSNTDDDQASSFVEK 50
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 133 AVLAVSAVPTPSNNKDGSTISELPENWDQTKDD 231
A A +A PS+ ST+ LP++WD DD
Sbjct: 500 AAAAAAAASEPSSGGPSSTV--LPKHWDPIPDD 530
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 100 TMLLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDN 234
T L T++ V+A PS DG T L NW + N
Sbjct: 276 TTCLSGFTSLPGPSGVTAFSQPSRWDDGQTNRHLSNNWSPPSEAN 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,880
Number of Sequences: 59808
Number of extensions: 325147
Number of successful extensions: 1022
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -