Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0903
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   7.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 157  PTPSNNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVD 336
            P P   +   T+   P   D+ ++D+ S      D+    P PL++S  G++D  D T D
Sbjct: 1364 PVPERPERVPTVDLSPSPSDRGRNDDGS------DRLTSPPTPLSISRAGSRD-EDSTRD 1416

Query: 337  Q-RFDSPQSNGELDN 378
              + D      E+ N
Sbjct: 1417 STKLDRSSREREVHN 1431


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 36  DHILRDLFILFYCPSTILTDRDYVIIFPNRYYSGPCCQRS 155
           D I++ L I    P  ++  ++ V +  N  Y+G  CQ++
Sbjct: 87  DMIVKQLEITMP-PEEVVIGKEIVAVCRNEEYTGDDCQKT 125


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 325 QTVDQRFDSPQSNGELDN 378
           Q +DQ+F  PQ N   DN
Sbjct: 124 QKLDQKFIFPQENNYNDN 141


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 450 TT*ERKRHKSRRGRC 494
           TT ++KRHK R  RC
Sbjct: 231 TTHQQKRHKLRVTRC 245


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 303 FFAEGKRVRFQIVFVTLV 250
           FF+ GK+  +Q+ F+ +V
Sbjct: 2   FFSSGKQQVYQLFFIQIV 19


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 280 KVPNRFCHSCSRREIG 233
           +V N  C+ C+ R+IG
Sbjct: 59  EVLNNHCNRCTSRQIG 74


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 316 GYDQTVDQRFDSPQSNGELDNLI 384
           GYD +V   F  P +  E+D ++
Sbjct: 16  GYDNSVRPDFGGPPATVEVDIMV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,860
Number of Sequences: 438
Number of extensions: 2870
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)