Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0902
         (463 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   2.4  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   5.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   9.7  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 340 ILTFI-SWMLSALAVTRLQQFLVTHREWWXALDAQRSFVNPLVAVLD*LKDVFLEENN 170
           I++F+ S  L   AVT +   L+ ++E W +L+    F++  +   +    VF E  N
Sbjct: 18  IVSFVNSIFLVMSAVTIILSSLIFNQEQWSSLNKNFQFIDKKLNNRNSKSRVFYENVN 75


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 258 GXRWMLNDPLSTH 220
           G R+++ND LS H
Sbjct: 134 GFRYLVNDELSAH 146


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 258 GXRWMLNDPLSTH 220
           G R+++ND LS H
Sbjct: 448 GFRYLVNDELSAH 460


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 304 PGHLTSMK*KLGCGTS 351
           PG L SM   + CGTS
Sbjct: 216 PGSLGSMGVSVPCGTS 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,883
Number of Sequences: 336
Number of extensions: 1994
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)