Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0902
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   132   2e-32
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   5.6  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    25   7.4  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    24   9.8  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  132 bits (320), Expect = 2e-32
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = -3

Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
           M LA+DLL+PS  SE RKH+LK+LV  P  +FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 239 TILCQPTGGRARLTEGCFFRRK 174
           ++LCQPTGG+ARL EGC FRRK
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRK 82


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 HHSLCVTKNCCNLVTARALNIHEIKVRMW 344
           +H+L   ++ C L  ++ L+ H I +R W
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKW 65


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 343 GTSRLSSCFLLSDAGEGCNKSIASG 417
           G   LSS +LLSDA  GC+ +   G
Sbjct: 84  GLPSLSSHYLLSDATTGCHLAQLDG 108


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 369 PPLRRRGRMQQINCERHGYSFNAQPEKKKKK 461
           P +   G+MQQ+  + +G  +     K+K+K
Sbjct: 49  PTMNIFGQMQQVRWKTYGNEYQPSNRKRKRK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,570
Number of Sequences: 5004
Number of extensions: 29757
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)