Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0902
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 126 7e-30
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 55 3e-08
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 53 1e-07
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 31 0.60
04_04_0303 + 24269467-24270741 29 1.8
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 27 7.3
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 7.3
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 27 7.3
05_05_0274 - 23755384-23755655,23755780-23756139,23756316-237564... 27 9.7
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 126 bits (305), Expect = 7e-30
Identities = 55/78 (70%), Positives = 63/78 (80%)
Frame = -3
Query: 407 IDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
IDLL+P E+ KH+ KRLV PN +FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 227 QPTGGRARLTEGCFFRRK 174
QPTGG+ARLTEGC FRRK
Sbjct: 67 QPTGGKARLTEGCSFRRK 84
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 54.8 bits (126), Expect = 3e-08
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = -3
Query: 407 IDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHA 270
IDLL+P E+ KH+ KRLV PN +FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 52.8 bits (121), Expect = 1e-07
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -3
Query: 407 IDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKI 291
IDLL+P E+ KH+ KRLV PN +FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 30.7 bits (66), Expect = 0.60
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 325 K*KLGCGTSRLSSCFLLSDAGEGCNKSIASGMVTALMHNRKKKKK 459
K K CGT L +C SD + + +S + ++ RKK KK
Sbjct: 846 KDKQNCGTCSLINCSCQSDRANSGSSASSSSSEASTLYGRKKNKK 890
>04_04_0303 + 24269467-24270741
Length = 424
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -3
Query: 410 AIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 231
A+ LLHP L ++PH +D CP Y+I ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 230 CQPTGGRA 207
C TG A
Sbjct: 198 CSATGAGA 205
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Frame = -3
Query: 443 RLCIKAVTMPLAI-DLLHPSPASERRKHELKRLVPHPNFYFMDVKC-----PGCYKITTV 282
R+C + + LA H + E + RL+ H F F+ + GC I+
Sbjct: 937 RICHQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCS 996
Query: 281 FSHAQRVVVCAGCSTIL---CQPTGGR 210
FS V C G + +L +P+ GR
Sbjct: 997 FSDDNNVYYCVGTAYVLPEENEPSKGR 1023
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 302 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 210
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 331 KLGCGTSRLSSCFLLSDAGEGCNKSIASGMVTALM 435
K+GC + S F L D G+G + + MV M
Sbjct: 198 KMGCSSFLPQSRFFLGDVGKGADMKLVVNMVMGSM 232
>05_05_0274 -
23755384-23755655,23755780-23756139,23756316-23756474,
23756757-23757235,23757344-23757475,23757723-23757797,
23757882-23757950,23758025-23758096,23758196-23758267,
23758348-23758419,23758526-23758687,23758786-23758857,
23758955-23759029,23759615-23759686,23759781-23759901,
23760051-23760138
Length = 783
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 65 SNGSIVVNLKNITPLYNWKKNLKIK*GSVQDL 160
SNG++ NL +WKK L+I GS + L
Sbjct: 684 SNGTLRENLTGSGMYLDWKKRLRIALGSARGL 715
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,065
Number of Sequences: 37544
Number of extensions: 205840
Number of successful extensions: 513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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