Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0902
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57847-1|AAB02266.1| 84|Homo sapiens ribosomal protein S27 pro... 159 4e-39
L19739-1|AAA59867.1| 84|Homo sapiens metallopanstimulin protein. 159 4e-39
BC070219-1|AAH70219.1| 84|Homo sapiens ribosomal protein S27 (... 159 4e-39
BC002658-1|AAH02658.1| 84|Homo sapiens ribosomal protein S27 (... 159 4e-39
AL358472-19|CAI14033.1| 84|Homo sapiens ribosomal protein S27 ... 159 4e-39
AB061845-1|BAB79483.1| 84|Homo sapiens ribosomal protein S27 p... 159 4e-39
BC003667-1|AAH03667.1| 84|Homo sapiens ribosomal protein S27-l... 153 2e-37
BC047648-1|AAH47648.1| 113|Homo sapiens RPS27L protein protein. 134 2e-31
AB007162-1|BAA25825.1| 69|Homo sapiens ribosomal protein S27 p... 131 1e-30
AL358472-18|CAI14032.1| 66|Homo sapiens ribosomal protein S27 ... 69 6e-12
AK098491-1|BAC05317.1| 190|Homo sapiens protein ( Homo sapiens ... 30 3.4
>U57847-1|AAB02266.1| 84|Homo sapiens ribosomal protein S27
protein.
Length = 84
Score = 159 bits (386), Expect = 4e-39
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>L19739-1|AAA59867.1| 84|Homo sapiens metallopanstimulin protein.
Length = 84
Score = 159 bits (386), Expect = 4e-39
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC070219-1|AAH70219.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 159 bits (386), Expect = 4e-39
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC002658-1|AAH02658.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 159 bits (386), Expect = 4e-39
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>AL358472-19|CAI14033.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 159 bits (386), Expect = 4e-39
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>AB061845-1|BAB79483.1| 84|Homo sapiens ribosomal protein S27
protein.
Length = 84
Score = 159 bits (386), Expect = 4e-39
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC003667-1|AAH03667.1| 84|Homo sapiens ribosomal protein S27-like
protein.
Length = 84
Score = 153 bits (372), Expect = 2e-37
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
MPLA DLLHPS E++KH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLARDLLHPSLEEEKKKHKEKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 239 TILCQPTGGRARLTEGCFFRRKQH 168
T+LCQPTGG+ARLTEGC FRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC047648-1|AAH47648.1| 113|Homo sapiens RPS27L protein protein.
Length = 113
Score = 134 bits (323), Expect = 2e-31
Identities = 59/77 (76%), Positives = 65/77 (84%)
Frame = -3
Query: 413 LAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTI 234
LA DLLHPS E++KH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCST+
Sbjct: 19 LARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTV 78
Query: 233 LCQPTGGRARLTEGCFF 183
LCQPTGG+ARLTEG F
Sbjct: 79 LCQPTGGKARLTEGISF 95
>AB007162-1|BAA25825.1| 69|Homo sapiens ribosomal protein S27
protein.
Length = 69
Score = 131 bits (317), Expect = 1e-30
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = -3
Query: 404 DLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQ 225
DLLHPSP E+RKH+ KRLV PN YFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQ
Sbjct: 1 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 60
Query: 224 PTGGRARLT 198
PTGG+ARLT
Sbjct: 61 PTGGKARLT 69
>AL358472-18|CAI14032.1| 66|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 66
Score = 69.3 bits (162), Expect = 6e-12
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = -3
Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPG 303
MPLA DLLHPSP E+RKH+ KRLV PN YFMDVKCPG
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPG 39
>AK098491-1|BAC05317.1| 190|Homo sapiens protein ( Homo sapiens
cDNA FLJ25625 fis, clone STM02974. ).
Length = 190
Score = 30.3 bits (65), Expect = 3.4
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Frame = +1
Query: 337 GCGTSRLSSCFL--------LSDAGEGCN----KSIASGMVTALMHNRKKKKKK 462
GCG S L S L LS G GC+ + A G VTA + +KKKKKK
Sbjct: 84 GCGGSHLYSQLLGRLKWEDGLSSGGRGCSELRGRHCAPGWVTARLCLKKKKKKK 137
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,118,755
Number of Sequences: 237096
Number of extensions: 1173522
Number of successful extensions: 3040
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3038
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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