Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0902
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   142   8e-35
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    31   0.40 
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    31   0.40 
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    30   0.93 
Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   3.7  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  142 bits (345), Expect = 8e-35
 Identities = 61/83 (73%), Positives = 70/83 (84%)
 Frame = -3

Query: 419 MPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 240
           MPLA+DLLHP P  E R H+LKRLV HPN YFMDVKC GC+KI+TVFSHA  VVVC GC+
Sbjct: 1   MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCN 60

Query: 239 TILCQPTGGRARLTEGCFFRRKQ 171
           T+LCQPT G+A+LTEGC FR+KQ
Sbjct: 61  TVLCQPTRGKAKLTEGCSFRKKQ 83


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 389 SPASERRKHELKRLVPHPNFYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
           +P  ERR  E +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 389 SPASERRKHELKRLVPHPNFYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
           +P  ERR  E +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 398 LHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVC 252
           LH +P      H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 81  LHATPG-RLHGHHSRRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical
           protein F36D3.13 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -3

Query: 458 FFFFFRLCIKAVTMPLAIDLLHPSPASERRKHELKRLVPHPNFYFMDVKCP--GCYKITT 285
           FF    + +   T+ L IDL  PS + E R    K LV      FM    P  G Y I  
Sbjct: 230 FFLIPSIILPIATISLIIDLKKPSRSQENRDRSSK-LVTFMTISFMIAMVPYSGLYIINF 288

Query: 284 VFSHAQRVVVCAGCSTIL 231
           V S +  +     C  ++
Sbjct: 289 VQSKSNGIRFILRCIEVI 306


>Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical
           protein C08F11.5 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 199 LKDVFLEENNINI*VLDRALFNFKIFFPIV*WSDIFQVHYNG 74
           ++DV ++ NNIN        F+F I+ PI   + IF+ +YNG
Sbjct: 246 VRDVLMKPNNINY-----GYFDFSIYDPIA-IARIFEPNYNG 281


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 308 PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 210
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,742
Number of Sequences: 27780
Number of extensions: 174402
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)