Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0902
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           132   1e-31
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   129   1e-30
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           123   5e-29
At2g44870.1 68415.m05586 expressed protein                             29   2.0  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    28   3.5  
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   4.7  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  132 bits (319), Expect = 1e-31
 Identities = 56/78 (71%), Positives = 64/78 (82%)
 Frame = -3

Query: 407 IDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
           IDLLHP P  E+RKH+LKRLV  PN +FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 227 QPTGGRARLTEGCFFRRK 174
           QPTGG+ARL EGC FR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  129 bits (311), Expect = 1e-30
 Identities = 56/78 (71%), Positives = 64/78 (82%)
 Frame = -3

Query: 407 IDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
           IDLL+P    E+RKH+LKRLV  PN +FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 227 QPTGGRARLTEGCFFRRK 174
           QPTGG+A+LTEGC FRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  123 bits (297), Expect = 5e-29
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = -3

Query: 407 IDLLHPSPASERRKHELKRLVPHPNFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
           IDLL+P    E+RKH+LKRLV  PN +FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 227 QPTGGRARLTEGCFFRRK 174
            PTGG+A+LTEGC FR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 335 NFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 216
           N + +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 335 NFYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 228
           +F+  D  CP CY+    F+   R   C  C  + C
Sbjct: 31  DFWMPDQSCPVCYECDAQFTVFNRRHHCRLCGRVFC 66


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 288 CNLVTARALNIHEIKVRMWH*PLKL 362
           C++  A  LNIH++   +WH PL L
Sbjct: 234 CHVAAANILNIHDVP-NIWHVPLLL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,880,551
Number of Sequences: 28952
Number of extensions: 163094
Number of successful extensions: 371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)