Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0899
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 291 5e-80
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 286 2e-78
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 235 3e-63
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 228 5e-61
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 209 3e-55
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 202 3e-53
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 99 3e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 91 2e-19
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 87 3e-18
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 85 1e-17
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 79 8e-16
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 78 1e-15
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 77 2e-15
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 76 4e-15
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 70 3e-13
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 70 3e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 64 1e-11
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 61 2e-10
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 37 0.002
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 1.9
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 2.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.4
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 4.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.9
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 7.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 7.9
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.9
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 7.9
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 7.9
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 291 bits (715), Expect = 5e-80
Identities = 134/182 (73%), Positives = 154/182 (84%)
Frame = +3
Query: 144 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 323
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 324 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 503
EDYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRN
Sbjct: 65 EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRN 124
Query: 504 DPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK 683
DP I EL K Q PV +EG+A+A+KI A+ YLECSAK+ EGVREVFE+ATRAA+ K
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHK 184
Query: 684 KK 689
K
Sbjct: 185 PK 186
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 286 bits (702), Expect = 2e-78
Identities = 128/176 (72%), Positives = 151/176 (85%)
Frame = +3
Query: 144 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 323
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 324 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 503
EDYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRN
Sbjct: 65 EDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRN 124
Query: 504 DPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 671
DP TI EL K Q+P+ +EG+ +A+KI A+ YLECSAK EGV EVFETA RA++
Sbjct: 125 DPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASM 180
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 235 bits (576), Expect = 3e-63
Identities = 108/179 (60%), Positives = 135/179 (75%)
Frame = +3
Query: 144 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 323
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 324 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 503
E+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+
Sbjct: 67 EEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRS 126
Query: 504 DPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVK 680
DP I E+R+ Q VK Q+ +A++I A Y+ECS+ + +GV +VFE ATRAAL V+
Sbjct: 127 DPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAALTVR 185
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 228 bits (558), Expect = 5e-61
Identities = 112/193 (58%), Positives = 135/193 (69%), Gaps = 2/193 (1%)
Frame = +3
Query: 111 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DG 284
S+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI +
Sbjct: 2 SAFKKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNS 61
Query: 285 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNV 464
K +ELALWDTAGQE+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRT 121
Query: 465 PIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREV 644
PI+LVG K DLR D LR PV Q+ +++A +NA Y+ECSAK GV EV
Sbjct: 122 PIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNA-PYVECSAKENTGVNEV 180
Query: 645 FETATRAALQVKK 683
F+ A L +KK
Sbjct: 181 FQLA--VGLTIKK 191
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 209 bits (511), Expect = 3e-55
Identities = 96/182 (52%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 332
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 333 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPA 512
DRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPS 124
Query: 513 TINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ--VKKK 686
+L + Q P+ ++G +A ++ A Y+ECSA +++G++ VF+ A AAL V K
Sbjct: 125 VQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVPHK 184
Query: 687 KK 692
KK
Sbjct: 185 KK 186
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 202 bits (494), Expect = 3e-53
Identities = 102/191 (53%), Positives = 127/191 (66%)
Frame = +3
Query: 114 SSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQV 293
SS I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +
Sbjct: 2 SSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSI 61
Query: 294 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPII 473
EL+LWDTAGQE+YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP V ++
Sbjct: 62 ELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLV 121
Query: 474 LVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFET 653
LV K DLR +E + + + +EG A A+KINA YLECSAK GV E F
Sbjct: 122 LVALKCDLRG----ADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTE 177
Query: 654 ATRAALQVKKK 686
A R AL + +
Sbjct: 178 AARVALAAQPR 188
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 99 bits (238), Expect = 3e-22
Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 1/180 (0%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 329
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 509
+ + Y IL+ + V S +N+ ++ +H NV IL+GNK D +
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCED-- 128
Query: 510 ATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 689
Q V ++G+A+A+++ +LE SAK+ V E F T R ++KK+K
Sbjct: 129 ----------QRQVSFEQGQALADELGV-KFLEASAKTNVNVDEAFFTLAR---EIKKQK 174
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 90.6 bits (215), Expect = 2e-19
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 2/180 (1%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 329
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 506
+ + Y I++ + V DS N+ ++W E+ + V +LVGNK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNRLLVGNKSDM--- 125
Query: 507 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 686
+ ++ V+ + A+ +N +LE SAK V + F T +R Q+K++
Sbjct: 126 ---------VDKKVVEYSVAKEFADSLN-IPFLETSAKDSTNVEQAFLTMSR---QIKER 172
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 86.6 bits (205), Expect = 3e-18
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Frame = +3
Query: 111 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-G 284
+S+ + + I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D
Sbjct: 2 ASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN 61
Query: 285 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP-N 461
V+L +WDTAGQE Y L P+ Y + + ++ + + SLE + W E++ P
Sbjct: 62 TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAPEG 120
Query: 462 VPIILVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRE 641
+ I L GNK DL + + V+ + A A + N + E SAK+ E V E
Sbjct: 121 IVIALAGNKLDLAQE-----------RRAVEKADAEAYAAEAN-LLFFETSAKTAENVNE 168
Query: 642 VFETATRAALQVKKK 686
+F TA L ++ K
Sbjct: 169 LF-TAIAKKLPLEDK 182
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 84.6 bits (200), Expect = 1e-17
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 5/179 (2%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 329
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN----VPIILVGNKKDL 497
+ L Y D ++ ++V++ S +++ E W E + P I+VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVGNQIDK 128
Query: 498 RNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 674
++ R + + K + G M + E SAK V ++FET +R AL+
Sbjct: 129 DASKRAVSLHRAL--DYCKSKHGSNM-------IHFEASAKENTNVTDLFETVSRLALE 178
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 78.6 bits (185), Expect = 8e-16
Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 3/172 (1%)
Frame = +3
Query: 141 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 314
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 315 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 491
AGQE + L P D+ V ++ + + + +S N EKW +V+ +V I+LVGNK
Sbjct: 68 AGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKT 126
Query: 492 DLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVF 647
DL + R++ QE EG A+++ ++E SAK+ V+ +F
Sbjct: 127 DLA-------DKRQVTQE-----EGEKKAKELK-IMHMETSAKAGHNVKLLF 165
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 78.2 bits (184), Expect = 1e-15
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 1/181 (0%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 332
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
Query: 333 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDP 509
+R + L+ +++ S S + I + ++ P++LV NK DL
Sbjct: 70 SAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLE--- 126
Query: 510 ATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 689
+ V EG +A+ ++ Y+E SAK + V E F + R + K +
Sbjct: 127 ---------AERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVRTIRRYNKSE 176
Query: 690 K 692
+
Sbjct: 177 E 177
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 77.0 bits (181), Expect = 2e-15
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 329
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 494
+ L Y D ++ + V++ S E + + W E + P+ P IL+GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDEFLIQASPSNPETFPFILLGNKVD 128
Query: 495 LRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 674
+ E ++M V + A + Y E SAK V+E FET + AL+
Sbjct: 129 -------VEEQKRM----VSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALE 177
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 76.2 bits (179), Expect = 4e-15
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 329
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 506
Y + Y L+ + + S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVGNKTDL--- 127
Query: 507 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFET 653
+ V +E +A A + N +++E SA V E F+T
Sbjct: 128 ---------LHLRAVSTEEAQAFAAE-NNLSFIETSAMDASNVEEAFQT 166
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 70.1 bits (164), Expect = 3e-13
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 329
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 500
LR Y ++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 70.1 bits (164), Expect = 3e-13
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Frame = +3
Query: 135 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 311
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 312 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNK 488
TAGQ++Y L ++ +S+ S S E + + H VPI++VGNK
Sbjct: 61 TAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNK 120
Query: 489 KDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFE 650
DL Q V +EG+A+A + A+ E SA+ E V FE
Sbjct: 121 SDLH------------MQRAVTAEEGKALANEWKC-AWTEASARHNENVARAFE 161
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 64.5 bits (150), Expect = 1e-11
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 317
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 318 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKD 494
GQE + + Y ++ + V + DS E + W +++ P+ + ++L G+K D
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPSTICVVLAGSKSD 129
Query: 495 LRN 503
L+N
Sbjct: 130 LQN 132
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 1/177 (0%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 329
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 509
+ + P+ D IL F + +L +I E W + + F IL+G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-WYRQARGFNKTAVPILIGTKYD----- 125
Query: 510 ATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVK 680
+ QE + Q R A+ + A + + CS V+++F+ +K
Sbjct: 126 -HFMTFPREDQEEITKQ-ARRYAKAMKA-SLVFCSTSHSINVQKIFKIVLAKVFDLK 179
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 37.1 bits (82), Expect = 0.002
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +3
Query: 153 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ-VELALWDTAGQED 329
++VI GD GK+ L+ ++ +P VF D V L L DT Q D
Sbjct: 5 RVVICGDQGVGKSSLISALIQED-NVTSIPKVFPIISIPSNPDSNDDVSLVLVDT--QSD 61
Query: 330 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 503
+ L+ ++C S E + W P + NVPI+L NK +DL N
Sbjct: 62 SNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
Score = 33.5 bits (73), Expect = 0.030
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +3
Query: 162 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 341
+VG +CGKT LL F + + TV V +E Q L L G+ D D L
Sbjct: 426 VVGSKSCGKTALLSSFINNNTNRLTPNTV----VNSVEFQSTQRYLVL-SEIGETDLDIL 480
Query: 342 -RPLSYPDTDVILMCFSVDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDPA 512
P S D++ + + +P+S I P+++ +P + K DL
Sbjct: 481 AEPKSLEACDILCLLYDSSNPNSFSFIANLLNLYPDLQ----KIPCVFAATKADLD---- 532
Query: 513 TINELRKMKQEPVKPQE 563
R+ ++ PV+P E
Sbjct: 533 -----RQQQRYPVQPDE 544
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -3
Query: 316 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 194
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 314 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 204
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 240 PTVFENYVADIEVDGKQVELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSV 392
P +FE+ I+ G V+L LW AG+ E DR+ P + LM F +
Sbjct: 1162 PFIFEDVERAIDPSGTNVDL-LWRAAGKFELLDRILPKLFLTGHKTLMFFQM 1212
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +3
Query: 477 VGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETA 656
VG ++ A+ +K+K K + + A E KS E ++V ETA
Sbjct: 45 VGGVYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDV-ETA 103
Query: 657 TRAALQVKKKKK 692
AA KKKKK
Sbjct: 104 AAAAAAAKKKKK 115
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 135 MAAIRKK--LVIVGDGACGKTCLL 200
+ I KK ++VGD A GKTC+L
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCIL 1886
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 402 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 500
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 223 N*SLLNTISRHVLPHAPSPTITNFLRIAAIGPELAEEE 110
N L N +S+H + P T+ FLR PE +E
Sbjct: 355 NDDLQNLLSKHRISRIPMSTVNAFLRAEDSIPESFSDE 392
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 516 INELRKMKQEPVKPQEGRAMAEKINAF 596
+++ +K K+ P KP+E + + +N+F
Sbjct: 388 VDDNKKKKKGPAKPKEKATLGKTVNSF 414
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 135 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 278
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 202 ISRHVLPHAPSPTITNFLRIAAIG 131
I H+LP+ TITNF R+ G
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPG 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,950
Number of Sequences: 5004
Number of extensions: 61800
Number of successful extensions: 247
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -