Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0898
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.5  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -3

Query: 384 WKQMMLTPSWPATSMIFLTLLKIAFFCSLTGRSVGTAMEC 265
           WK    T  +    + F+ LL I+FF +       T   C
Sbjct: 124 WKSYKRTQIFITCELFFVILLWISFFLNFMLHCNNTTWRC 163


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 449 ESDEDGPTTTF 481
           ESDE+ PTT+F
Sbjct: 85  ESDEEKPTTSF 95


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 358 LAGNIDDFLDFIENCFLLLVDWT 290
           L   +DDF D     FLL++ ++
Sbjct: 189 LKNTVDDFNDIFGISFLLIISYS 211


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 266 HSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGV 367
           + IAV  D   NE  +   N +KK+  +A   GV
Sbjct: 13  YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGV 46


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 610 FPDHVSGVTNYNRSVPKY 557
           FP H S + N N  + KY
Sbjct: 196 FPRHASDLDNCNHLMTKY 213


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 446  AESDEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 562
            AE    GP T+   E   ++++V+      R+E + DIL
Sbjct: 991  AEEVPGGPPTSIRVETNDQHSLVVYWKPPAREEWNGDIL 1029


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,308
Number of Sequences: 336
Number of extensions: 3641
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)