Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0898
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 210 8e-55
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 49 3e-06
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 47 1e-05
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 45 7e-05
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 38 0.010
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 32 0.39
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 30 2.1
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176... 29 2.8
08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527... 29 4.8
04_04_0290 - 24174361-24174744,24175057-24175209,24175323-241755... 28 6.4
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 6.4
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 210 bits (513), Expect = 8e-55
Identities = 112/214 (52%), Positives = 139/214 (64%), Gaps = 8/214 (3%)
Frame = +2
Query: 50 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 220
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 221 EQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 385
E R PR+++VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 386 ELWNMPFAFCTREKQPWCEFAESDEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 565
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEP-VDGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 566 NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYM 667
NTAVVI + GN+IG HRKNHIPRVGDFNES YYM
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYM 239
Score = 31.9 bits (69), Expect = 0.52
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3
Query: 669 EGNTGHPVFATRYG 710
EGNTGHPVF T YG
Sbjct: 240 EGNTGHPVFETAYG 253
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/111 (27%), Positives = 59/111 (53%)
Frame = +2
Query: 332 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESDEDGPTTTFLRELAIKYAM 511
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 512 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYY 664
VI S E + ++ +N+ +I G +G +RK+HIP + E Y+
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYF 138
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +2
Query: 296 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESDEDG--- 466
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 467 -PTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 628
P+ + + E+A + +V + E+ + L+NT V G + GKHRK H+
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +2
Query: 374 ICFQELWNMPFAFCTREKQPWCEFAESDEDG--PTTTFLRELAIKYAMVIVSSILERDEK 547
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 548 HSDILWNTAVVISDTGNVIGKHRKNHI 628
S L+NT VI G + KHRK H+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHL 95
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +2
Query: 446 AESDEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 619
A D GP T L LA KY + +V ++ER L+NT + G +GKHRK
Sbjct: 104 AAIDVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK 158
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 464 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 619
GP T L +A KY + +V ++ER+ L+ + + G +GKHRK
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK 162
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 465 PSSSDSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 355
PS++ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>12_02_0967 -
24916352-24916402,24916662-24916717,24917602-24917685,
24917751-24918251,24918520-24919207
Length = 459
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = -2
Query: 706 YLVANTGWPV--LPSHVVVGFV----KIADSRNVVLAMFPDHVSGVTNYNRSVPKYVRML 545
Y+VA WP L + +++ FV K A+ + P+ V +N + K
Sbjct: 74 YVVAKASWPDVRLRAAMIITFVSGSIKYAERTLCLYLASPEKVR--SNAQNDLSKLQTPD 131
Query: 544 LVPF*YRGHDHHCVLDGEFPKEGRGRPVFI*FGKLAPRLLLPCAEREGHVPQLLE 380
P + C+L+G +P GR F AP+ +L VP +L+
Sbjct: 132 FQPSSLTSYVFDCILEGRYPGNDSGRRETYFFSVDAPQNMLQSTTCANDVPGILQ 186
>08_02_0279 -
15249361-15249612,15251270-15251506,15252704-15252772,
15252845-15252895,15254009-15254056,15254187-15254267,
15256219-15256257,15256486-15256551,15258113-15258236,
15258576-15258696,15258771-15258900,15259692-15259853
Length = 459
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 595 KRDRETSQEPHSESRRF*RIQLLHGKVTPAILYLRP 702
KR+RE + PH F R+ + P +L+ RP
Sbjct: 358 KRERELKRRPHQNGWLFKRVPEMRDPEEPVMLFTRP 393
>04_04_0290 -
24174361-24174744,24175057-24175209,24175323-24175581,
24175659-24176167
Length = 434
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 449 ESDEDGPTTTFLRELAIKYAMV-IVSSILERDEKH 550
E D+DG T+T YAMV V S+L R+ +H
Sbjct: 52 EHDDDGFTSTLSDAARNNYAMVGAVQSLLSRESRH 86
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 438 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 307
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,330
Number of Sequences: 37544
Number of extensions: 448827
Number of successful extensions: 1320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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