Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0898
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 49 4e-06
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 44 9e-05
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 35 0.075
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.23
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 0.92
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 2.1
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20) 29 2.8
SB_53357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18449| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 3.7
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 3.7
SB_57243| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 4.9
SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 4.9
SB_43121| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 29 4.9
SB_34233| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 4.9
SB_697| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 29 4.9
SB_411| Best HMM Match : RVT_1 (HMM E-Value=2.5e-29) 29 4.9
SB_53290| Best HMM Match : RVT_1 (HMM E-Value=3.8e-31) 29 4.9
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32) 29 4.9
SB_38701| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 4.9
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28151| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 4.9
SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_3870| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 28 6.5
SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 6.5
SB_45153| Best HMM Match : rve (HMM E-Value=0) 28 6.5
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43) 28 8.6
SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87) 28 8.6
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5) 28 8.6
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 8.6
SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1) 28 8.6
>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
Length = 101
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = +2
Query: 32 MENETHSLESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFP 211
M E SL + NL DL+E RI +G + ++ L +++
Sbjct: 1 MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQ 307
A E+ R PR+V++G VQ+ I PT+ P+ +Q
Sbjct: 60 AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 44.4 bits (100), Expect = 9e-05
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 IVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 421
+ ++G+VQ +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52
Query: 422 EKQPWCEFAESDEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGN 598
Q + ++AE + G ++ L E+A + IV SI ER L+NT++ +GN
Sbjct: 53 -TQYFKDYAE-EIPGESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGN 108
Query: 599 VIGKHRKNHI 628
++GKHRK H+
Sbjct: 109 LMGKHRKIHL 118
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 41.5 bits (93), Expect = 7e-04
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +2
Query: 233 PPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAF 412
P + ++G+VQ +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 4 PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54
Query: 413 CTREKQPWCEFAESDEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISD 589
Q + ++AE + G ++ L E+A + IV SI ER L+NT++
Sbjct: 55 ----TQYFKDYAE-EIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDP 107
Query: 590 TGNVIGKHRK 619
+GN++GKHRK
Sbjct: 108 SGNLMGKHRK 117
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 34.7 bits (76), Expect = 0.075
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 440 EFAESDEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKHR 616
++AE + G ++ L E+A + IV SI ER L+NT++ +GN++GKHR
Sbjct: 14 DYAE-EIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHR 70
Query: 617 KNHI 628
K H+
Sbjct: 71 KIHL 74
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 33.1 bits (72), Expect = 0.23
Identities = 32/121 (26%), Positives = 48/121 (39%)
Frame = +2
Query: 218 DEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWN 397
DEQ P V + I VP D V++ +V + I V ++ I Q+
Sbjct: 1695 DEQVSQPITVLDEQILQPITVP-DEQVSQPITVPDEQVSQPITVQNKKDSQQIAVQDERT 1753
Query: 398 MPFAFCTREKQPWCEFAESDEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAV 577
PF TR+K P E ++ D D + +E V S LE + + +T V
Sbjct: 1754 EPF---TRQKYPLFEISQQDHDLESEIMSKETVFWPVRVKQESALESETPEQEPFLDTVV 1810
Query: 578 V 580
V
Sbjct: 1811 V 1811
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P VK H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 553 RMLLVPF*YRGHDHHCVLDGEFPKE 479
R L+ PF +R +DH V+D FPK+
Sbjct: 74 RKLIKPFYFRQYDHGSVVDAIFPKD 98
>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
Length = 1803
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 449 ESDEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 562
E DED FLR++ IK SS++++ KH D+L
Sbjct: 656 EDDED--KLLFLRDIMIKLHRSKASSVMDQPGKHEDVL 691
>SB_53357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKFSSSPLPRSKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 153 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 236
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
AKD + P VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869
>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 104 LTFKKAYDIASS-METTAQHMADLQSAPPTLSSTSASVKKVSSSPLPRFKSENKECYRCG 162
Query: 671 R*HRPS 688
+ H PS
Sbjct: 163 KNHHPS 168
>SB_18449| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 624
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMADLQSAPPTLSSTSASVKKVSSSPLPRFKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 403 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 293
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
Length = 250
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P VK H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223
>SB_57243| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 341
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 38 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKISSSPLPRSKSENKECYRCG 96
Query: 671 R*HRPS 688
+ H PS
Sbjct: 97 KNHHPS 102
>SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 529
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 304 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 362
Query: 671 R*HRPS 688
+ H PS
Sbjct: 363 KNHHPS 368
>SB_43121| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1037
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_34233| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 216
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 38 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 96
Query: 671 R*HRPS 688
+ H PS
Sbjct: 97 KNHHPS 102
>SB_697| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 603
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 38 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 96
Query: 671 R*HRPS 688
+ H PS
Sbjct: 97 KNHHPS 102
>SB_411| Best HMM Match : RVT_1 (HMM E-Value=2.5e-29)
Length = 730
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 38 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 96
Query: 671 R*HRPS 688
+ H PS
Sbjct: 97 KNHHPS 102
>SB_53290| Best HMM Match : RVT_1 (HMM E-Value=3.8e-31)
Length = 1090
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
Length = 1845
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 140 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 198
Query: 671 R*HRPS 688
+ H PS
Sbjct: 199 KNHHPS 204
>SB_38701| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 314
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMAELQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_28151| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 410
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 38 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 96
Query: 671 R*HRPS 688
+ H PS
Sbjct: 97 KNHHPS 102
>SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1392
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 139 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 197
Query: 671 R*HRPS 688
+ H PS
Sbjct: 198 KNHHPS 203
>SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 155 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 213
Query: 671 R*HRPS 688
+ H PS
Sbjct: 214 KNHHPS 219
>SB_3870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 221 LTFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 279
Query: 671 R*HRPS 688
+ H PS
Sbjct: 280 KNHHPS 285
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 215 KDEQTRPPRIVKVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 370
+D T P V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 964 QDPPTDHPNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 327
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 38 LTFKKAYDIASS-METTAQHMADLQSAPFTLSSTSASVKKVSSSPLPRSKSENKECYRCG 96
Query: 671 R*HRPS 688
+ H PS
Sbjct: 97 KNHPPS 102
>SB_45153| Best HMM Match : rve (HMM E-Value=0)
Length = 2264
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 491 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMG 670
L K A I SS +E +H L + +S T + K + +PR N+ Y G
Sbjct: 1075 LLFKKAYDIASS-METTAQHMADLQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCG 1133
Query: 671 R*HRPS 688
+ H PS
Sbjct: 1134 KNHHPS 1139
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 150 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPR 239
K PR R S+SP SRP+ + P PR
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPR 1076
>SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)
Length = 802
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P +VK H + +P ++P+ E + + + +K+ + +V
Sbjct: 653 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 699
>SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87)
Length = 957
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 542 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 588
>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
Length = 773
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P +VK H + +P ++P+ E + + + +K+ + +V
Sbjct: 624 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 670
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 686 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 732
>SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1115
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 349
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 749 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 795
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,272,922
Number of Sequences: 59808
Number of extensions: 500637
Number of successful extensions: 1568
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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