Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0898
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   202   1e-52
Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    30   1.9  
Z35598-4|CAA84653.1|  488|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    28   5.7  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    28   7.6  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  202 bits (494), Expect = 1e-52
 Identities = 105/207 (50%), Positives = 132/207 (63%), Gaps = 2/207 (0%)
 Frame = +2

Query: 53  LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 226
           +E+ +   L G  L+E  RI +GR       L+ SSI              +   A+ EQ
Sbjct: 11  VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67

Query: 227 TRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPF 406
           TR PR+V+V  +Q+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE W MPF
Sbjct: 68  TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127

Query: 407 AFCTREKQPWCEFAESDEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVIS 586
           AFCTRE+ PW EFAES   GPTT FL +LA+K+ +VI+S ILERDE+  D++WNTAVVIS
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVIS 187

Query: 587 DTGNVIGKHRKNHIPRVGDFNESNYYM 667
            TG VIG+ RKNHIPRVGDFNES YYM
Sbjct: 188 HTGRVIGRSRKNHIPRVGDFNESTYYM 214


>Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical
           protein C34E7.3 protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -3

Query: 489 SRRKVVVGPSSSDSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATS 343
           SR K+    +SS   +  HG + +V+ AK  F + +++  +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 401 PFAFCTREKQPWCEFAESDEDGPTTTFLRELAIKYAMVIVSSILERDEKH 550
           P  +   E+   C FA SD    T TF  E+ +KY   +  + +E++E +
Sbjct: 365 PAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENN 414


>Z35598-4|CAA84653.1|  488|Caenorhabditis elegans Hypothetical
           protein F10F2.6 protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 461 DGPTTTFLRELAIKYAMVIVSS---ILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIP 631
           DG ++ +   L I++   +VS+   +    EK  D L       SD   +   H      
Sbjct: 308 DGFSSYYRAALGIQWCHKLVSNKEVVYSEAEKECDSLGAHVSGFSDQTELDFMHNMTMKS 367

Query: 632 RVGDFNESNYYMGR*HRPSCI 694
            +G  + SN Y+G   RP CI
Sbjct: 368 SLGRHHYSNVYIGARRRPECI 388


>AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical
           protein F13B6.1 protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 670 SHVVVGFVKIADSRNVVLAMFPDHVSGVTNYNR 572
           + V+ GFV + DS+++V     D + G+TNY++
Sbjct: 154 NQVLNGFVGLPDSKDMVQFFDSDSIEGLTNYDQ 186


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 615 RCFPITFPVSLITTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 469
           +C P+TF ++   T +       F+++  IE+T I IA L+  +   V++
Sbjct: 75  KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 311 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 445
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 311 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 445
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 563 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYM 667
           WN  + + D   ++   +  H+ R GD+   NY++
Sbjct: 266 WNKKIAMKDVPFIVYSPQFEHVIRGGDWENENYFL 300


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 465 PSSSDSANSHHGCFSLVQNAK-GMFHNSWKQMMLTP 361
           PSSS+S    HG F +  N   G FH    Q M+TP
Sbjct: 855 PSSSNS--QQHGQFQVCSNGSLGFFHPQIYQSMMTP 888


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,767
Number of Sequences: 27780
Number of extensions: 365735
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)