Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0896
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   1.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.8  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   9.8  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 402 FRCDLDGHRPADGRQLTLLRVLDVGEGLRQD 494
           FRC L   RPA G Q    R+L+   G+RQ+
Sbjct: 63  FRCYL---RPASGFQSLQFRLLENKLGVRQE 90


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 402 FRCDLDGHRPADGRQLTLLRVLDVGEGLRQD 494
           FRC L   RPA G Q    R+L+   G+RQ+
Sbjct: 123 FRCYL---RPASGFQSLQFRLLENKLGVRQE 150


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 402 FRCDLDGHRPADGRQLTLLRVLDVGEGLRQD 494
           FRC L   RPA G Q    R+L+   G+RQ+
Sbjct: 123 FRCYL---RPASGFQSLQFRLLENKLGVRQE 150


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 423 HRPADGRQLTLLRVLDVGEGLRQDLQAVDA 512
           H    G +L L      G+GL +DLQ + A
Sbjct: 158 HTKGIGAKLLLQMGFQPGKGLGKDLQGISA 187


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 242  KTKKKNGGSVWKLTYETFNGR 180
            K  K  GG VW L  + F  R
Sbjct: 2651 KALKLGGGMVWALDLDDFKNR 2671


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 533 VSAYHRARVYGLKILTEPFA 474
           V+AY    V  LKI   PFA
Sbjct: 181 VTAYQNEEVTALKIKYNPFA 200


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 533 VSAYHRARVYGLKILTEPFA 474
           V+AY   ++  LKI   PFA
Sbjct: 178 VTAYQNEKITKLKINYNPFA 197


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 452 GQLSTISRTVTVEIAPKDVLDQALKGEA 369
           G LSTI    T+     D+L QA K EA
Sbjct: 164 GILSTIFLCDTILKKVDDILSQAYKLEA 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,567
Number of Sequences: 336
Number of extensions: 1515
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)