Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0896
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   4.5  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   5.9  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 47  LLTVCTM*RYALNLQYASSYSSRLYWNEISLY 142
           L+ V    RY +N+++++  S   Y+N ISLY
Sbjct: 66  LVKVAGFQRYIVNVEFSNVQSYFRYYNYISLY 97


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 306 DGQRYIARYLKIAVRYFFVLFRFALERLVEDVF 404
           D  R+    L I   YFF+ + FAL  L+  VF
Sbjct: 59  DNYRFYGTLLCICWLYFFIWYPFALLALMVGVF 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,215
Number of Sequences: 5004
Number of extensions: 26098
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)