Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0896
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.071
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_15430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_23805| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=7.1)            28   4.7  
SB_12655| Best HMM Match : Astacin (HMM E-Value=0)                     27   8.2  

>SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -1

Query: 566 YVALRFLGTNTVSAYHRARVYGLKIL----TEPFADVQDSEQG 450
           Y+ LR LG N VS Y RAR+  L I+     E  A  + SEQG
Sbjct: 61  YLCLRLLGFNIVSVYRRARITALTIIGRKPEERTASPEPSEQG 103


>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 518 RARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKD 399
           R R  G +I+ +   D  DSE    +T+SRTV   IAP D
Sbjct: 239 RFRRTGTRIIEQLVQDAMDSESADTATLSRTV---IAPHD 275


>SB_15430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 432 ADGRQLTLLRVLDVGEGLRQDLQAVDAGPVVRRHRVRAQE 551
           +D R  TL+RV ++G+G R      +  PV++ +  R QE
Sbjct: 99  SDQRGKTLIRVRNLGKGGRCKAALAEIDPVIQENTERVQE 138


>SB_23805| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=7.1)
          Length = 126

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 387 LVEDVFRCDLDGHRPADGRQLTLLRVLDVGEGLRQDLQAV 506
           L++DV +C LD H    G  L  L   + G  L+Q ++ V
Sbjct: 80  LLQDVIKCALDTHEWTRGIYLDCLIYFESGSSLKQLMEIV 119


>SB_12655| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 482

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 104 YSSRLYWN-EISLYNIFNIYFHRILCGVH*KFHKLTSTHY 220
           Y   L+WN E   +N FN+Y H +L  ++  +   +  HY
Sbjct: 372 YVKILWWNIEPGFFNNFNVYSHSVLDTLNAPYDYHSLMHY 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,555
Number of Sequences: 59808
Number of extensions: 201866
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)