Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0896
         (569 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006012-1|AAO74695.1|  562|Drosophila melanogaster LD08641p pro...    33   0.27 
AE014134-500|AAN10395.1|  562|Drosophila melanogaster CG2991-PC,...    33   0.27 
AE014134-499|AAF51190.1|  562|Drosophila melanogaster CG2991-PB,...    33   0.27 
AE014134-498|AAF51189.1|  562|Drosophila melanogaster CG2991-PA,...    33   0.27 

>BT006012-1|AAO74695.1|  562|Drosophila melanogaster LD08641p
           protein.
          Length = 562

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -1

Query: 566 YVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKDV 396
           YV ++ LG NTV AY RA+V  + I+T        SE  +L TI   V+   + + V
Sbjct: 507 YVCVKCLGENTVVAYQRAKVSSINIVT-------SSEMEKLHTICEEVSASTSAEAV 556


>AE014134-500|AAN10395.1|  562|Drosophila melanogaster CG2991-PC,
           isoform C protein.
          Length = 562

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -1

Query: 566 YVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKDV 396
           YV ++ LG NTV AY RA+V  + I+T        SE  +L TI   V+   + + V
Sbjct: 507 YVCVKCLGENTVVAYQRAKVSSINIVT-------SSEMEKLHTICEEVSASTSAEAV 556


>AE014134-499|AAF51190.1|  562|Drosophila melanogaster CG2991-PB,
           isoform B protein.
          Length = 562

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -1

Query: 566 YVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKDV 396
           YV ++ LG NTV AY RA+V  + I+T        SE  +L TI   V+   + + V
Sbjct: 507 YVCVKCLGENTVVAYQRAKVSSINIVT-------SSEMEKLHTICEEVSASTSAEAV 556


>AE014134-498|AAF51189.1|  562|Drosophila melanogaster CG2991-PA,
           isoform A protein.
          Length = 562

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -1

Query: 566 YVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKDV 396
           YV ++ LG NTV AY RA+V  + I+T        SE  +L TI   V+   + + V
Sbjct: 507 YVCVKCLGENTVVAYQRAKVSSINIVT-------SSEMEKLHTICEEVSASTSAEAV 556


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,519
Number of Sequences: 53049
Number of extensions: 274455
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)