Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0896
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      28   4.1  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbona...    27   7.2  
U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbona...    27   7.2  
AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion transpo...    27   7.2  
AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion transpo...    27   7.2  
U41546-7|AAC48217.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 43  VTAYSMHYVTICTELTICFLIFITFVLERNXXXXXXXXXXSSHSLR 180
           VT      V +C  LTICF ++  F+ E+             HS R
Sbjct: 321 VTLIVFSAVVLCQVLTICFALYFVFMREKEVKIIYVEXPHRRHSHR 366


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 397 TSFGAISTVTVLLMVDS*PCSESWTSAKGSVRIFR 501
           T FG I  V   +MVD+ P SE W S  G    +R
Sbjct: 52  TGFGIIEKVNNFIMVDAWPISE-WWSPNGGYEKYR 85


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 43  VTAYSMHYVTICTELTICFLIFITFVLERNXXXXXXXXXXSSHSLR 180
           VT      V +C  LTICF ++  F+ E+             HS R
Sbjct: 247 VTLIVFSAVVLCQVLTICFALYFVFMREKEVKIIYVEPPHRRHSHR 292


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 417 DGHRPADGRQLTLLRVLDVGEGLRQDLQAVD 509
           D HR A+ + + +  +L   E LRQD +A D
Sbjct: 501 DAHRKAEDKDVRISELLTTIESLRQDSEASD 531


>U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform b protein.
          Length = 883

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  AYSMHYVTICTELTICFLIFITFVLE 126
           A+ +HYVTI TE   C LI + F  E
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSE 573


>U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform a protein.
          Length = 956

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  AYSMHYVTICTELTICFLIFITFVLE 126
           A+ +HYVTI TE   C LI + F  E
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSE 573


>AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion
           transporter ABTS-4b protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  AYSMHYVTICTELTICFLIFITFVLE 126
           A+ +HYVTI TE   C LI + F  E
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSE 573


>AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion
           transporter ABTS-4a protein.
          Length = 956

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  AYSMHYVTICTELTICFLIFITFVLE 126
           A+ +HYVTI TE   C LI + F  E
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSE 573


>U41546-7|AAC48217.1|  185|Caenorhabditis elegans Hypothetical
           protein T25B6.1 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 212 WKLTYETFNGRRRECDENKY*KYYIKKF 129
           WK  YET     +ECDE K+ K+   +F
Sbjct: 109 WK-NYETVEKLLKECDEEKFAKFMNSQF 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,074,311
Number of Sequences: 27780
Number of extensions: 147793
Number of successful extensions: 443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)