Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0894
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 28 1.1
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 28 1.5
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 1.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 1.9
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 3.4
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 3.4
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 5.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.9
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 7.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 7.8
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.8
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.8
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 101 DSEKDLRAITPLDKNKNNSENEIHDDEIQSEVAE 202
+ KD A TPLD++ SE E DD + S++ E
Sbjct: 35 EESKDWIADTPLDESAIVSEEESDDDSLLSDLPE 68
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 491 ANAMVETEAITPEPTYDKENVVADIHTEEPQDIFPEISSKHTMPPEIRL 637
A V+ + PEP D+E +D EEP++I I+ T+ I L
Sbjct: 479 AERSVKVTKVEPEPI-DEEEAFSDDEEEEPEEIKERIAIPKTLIATITL 526
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 83 ELQDCSDSEKDLRAITPLDKNKNNSENEIHDD 178
+L D S K R+ TP + K+NS N+ H D
Sbjct: 139 KLSDDEASNKSSRSSTPRNSIKSNSSNQGHGD 170
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 568 VNICNNVFFVIGWFRCNGF-SFNHCISRY 485
+N C F GW+ +GF FNH I Y
Sbjct: 1177 INCCFATLFFFGWYYPSGFYEFNHNIPFY 1205
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 434 NPNPEETSETKSVEDFNVAANAMVETEAITPEP 532
NP+PE+T +SVE V +N + + + P P
Sbjct: 216 NPSPEDTVAFQSVELQKVISNNRLNSSSTPPTP 248
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -1
Query: 492 AATLKSSTDFVSDVSSGLGLFICSVNSTSNTFSLFSKEFSMSDSTFLYSSTWYL 331
AAT S + F D L + + S S F LF+K+ ++S+ +Y+ST+ L
Sbjct: 520 AATTTSFSQFSVDNERST-LLVGNPPSNSIYFFLFAKDETVSEQAPIYNSTYEL 572
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 545 ENVVADIHTEEPQDIFPEISSKHTMPPEIRLYGQEFTLSENADSPVP 685
EN V D + +P ++ ++S K PE+R +EF LS+ VP
Sbjct: 13 ENGVPD--SAQPMEL--DVSKKEDTEPEVRDEAKEFLLSQLPQVEVP 55
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 77 NDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDE 181
+D+L + S++DL D+N ++S+ EI+D++
Sbjct: 148 DDKLSEEDLSKEDLETTLKGDENYSSSQKEIYDND 182
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 PESHKLMFEQIPEIPDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENE-IHDD 178
P+ ++ E++ + K LG L++ D E LRA++ N+E+E + D
Sbjct: 325 PKKRNILTEELEKYKKSKKVVLG-KRKNLEN--DEESTLRALSSFQSKIRNAEDEDVMDS 381
Query: 179 EIQSEVAES 205
+ S++ ++
Sbjct: 382 QYGSKIEDT 390
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 47 DGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEIQSEVAESFI 211
DG +E G + + ++ EKD + + ++SE D+E + +V E FI
Sbjct: 19 DGYPAENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSEESATDEEAERQVREGFI 73
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 471 WKILM*RLMQWLKLKPLHLNQPMTKKTLLQIFTLKNPKIFS 593
W L+ W KL LN+P T KT L+I + K+FS
Sbjct: 91 WDCLVEHGATWAKLLIALLNRPETPKT-LEIAMITVSKMFS 130
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 435 LFICSVNSTSNTFSLFSKEFSMSDSTFLY 349
+ +C++ S F L+ K ++ +D+ FL+
Sbjct: 897 MVLCAIVQFSGVFFLYLKNYNFNDNQFLF 925
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 56 SSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEIQ 187
+SE F N +++D E+DLRA N+ ++ + D + Q
Sbjct: 447 NSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEKSALIDKKDQ 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,614
Number of Sequences: 5004
Number of extensions: 40070
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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