Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0894
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1058 + 24001584-24001898,24002391-24002507                       28   8.1  
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830...    28   8.1  

>08_02_1058 + 24001584-24001898,24002391-24002507
          Length = 143

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 443 PEETSETKSVEDFNVAANAMVETEAITPEPT-YDKENVVADIHTEEPQDIFPEISSKHTM 619
           P    +  SVE F  + +A +   A   E T Y + N++ +  + EP+    E ++ H  
Sbjct: 47  PTAVVDEASVEPFVCSGDAHMVLPAPVVELTKYSQPNLIMNPRSSEPEASNKETTTIHKA 106

Query: 620 PPE 628
           PP+
Sbjct: 107 PPD 109


>03_05_0042 + 20180151-20180468,20181595-20181665,20182929-20183087,
            20183598-20183664,20183913-20184008,20184687-20184733,
            20185113-20185193,20185704-20185806,20185967-20186028,
            20187188-20187302,20193191-20195087,20195206-20195492
          Length = 1100

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +2

Query: 485  VAANAMVETEAITPEPTYDKENVVADIHTEEPQDIFPEISSKHTMPPEIRLYGQEFTLSE 664
            VAAN     +A  P P  D ++   D+      D   E+   H  PP++          +
Sbjct: 824  VAANTG-NNKAFGPSPIIDVQSAPEDVVVISDDDNEDEVGGMHQKPPQLETAPSSLE-GQ 881

Query: 665  NADSPVPS 688
            NA+S + S
Sbjct: 882  NAESQIIS 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,218
Number of Sequences: 37544
Number of extensions: 226988
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)