Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0894
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              28   0.097
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.52 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 428 INNPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVADIHTEEPQDI 589
           I N   ++  + K+V+    AA    +  AI PEP   + +++ +I+  EPQDI
Sbjct: 606 ILNWRNQKDIDVKTVQVIEDAAQKK-KHRAIRPEPIDAQFDIIQNIYIPEPQDI 658


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 446 EETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVADIHTEEPQD 586
           +E+S  +SVE   +  NA+V T A    P  + E  +A +  EEP D
Sbjct: 26  QESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEG-MAGVTGEEPFD 71


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 581 QDIFPEISSKHTMPPEIRLYGQEFTLSENADSPVPSPQ 694
           Q + P++S   T P E RLY      S+      PSPQ
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNPALIQSQ------PSPQ 441


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 426 K*ITPILKKHLK 461
           K ITP+++KHLK
Sbjct: 313 KYITPLIQKHLK 324


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 527 EPTYDKENVVADIHTEEPQDIFPEISSKHTMPPEIRLYGQEFTLSENAD 673
           E T DK++  +D    + Q  FP  SS     P        F+L+ + D
Sbjct: 83  EETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTDGD 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,573
Number of Sequences: 438
Number of extensions: 2507
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)