Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0894
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 35 0.059
At5g54790.1 68418.m06825 hypothetical protein 34 0.078
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 31 0.55
At3g05540.1 68416.m00607 translationally controlled tumor family... 30 1.3
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden... 30 1.7
At2g42380.2 68415.m05245 bZIP transcription factor family protein 30 1.7
At2g42380.1 68415.m05244 bZIP transcription factor family protein 30 1.7
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 29 3.9
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 28 5.1
At1g74690.1 68414.m08650 calmodulin-binding family protein low s... 28 5.1
At4g21440.1 68417.m03099 myb family transcription factor (MYB102... 28 6.8
At3g54700.1 68416.m06052 phosphate transporter, putative strong ... 28 6.8
At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 / a... 27 9.0
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 27 9.0
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 27 9.0
At1g61390.1 68414.m06918 S-locus protein kinase, putative contai... 27 9.0
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 27 9.0
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 9.0
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 434 NPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVADI 565
NP+ EE E + V+D +V+T + +PTYDK+ +A I
Sbjct: 48 NPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYI 91
>At5g54790.1 68418.m06825 hypothetical protein
Length = 119
Score = 34.3 bits (75), Expect = 0.078
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 431 NNPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVADIHT-EEPQDIFPEISS 607
++ NPEE+S T EDF A++++V+ + D + VA T + +
Sbjct: 21 DDQNPEESSWTMYFEDFFEASSSIVDVGDFSSSSVSDAASFVATKKTLNVSKQEGSNLDI 80
Query: 608 KHTMPPEIRLYGQEFTLSENADSPVPSP 691
K T EI +G+ L + A SP SP
Sbjct: 81 KRTRNREIP-FGRHHDLEDTASSPSGSP 107
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 8 SHKLMFEQIPEIPDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNK 148
S +F+Q+P +PD EL + + + DCS E L +T K K
Sbjct: 82 SQPCIFDQLPSLPDEDVEELEWVSRVVDDCSSPEVSL-LLTQTHKTK 127
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 434 NPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVV 556
NP+ EE E + V+D V +++T + +P++DK+ V
Sbjct: 35 NPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSFDKKQFV 75
>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
identical to FKBP12 interacting protein (FIP37)
GI:3859944 from [Arabidopsis thaliana]
Length = 330
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 14 KLMFEQIPEIPDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNS 157
K F+ +P GKS E F D +Q+ SEK L+ + K K S
Sbjct: 86 KSAFQNESFVPAGKSPEPRFLIDYIQNLKSSEKSLKEQLEIAKRKEAS 133
>At2g42380.2 68415.m05245 bZIP transcription factor family protein
Length = 321
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 44 PDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEIQSE 193
P G SS ++ D D + + P D N NN+ N ++DE+QS+
Sbjct: 118 PTGSSSNTSTPSNSFND------DNKELPPSDHNMNNNINNNYNDEVQSQ 161
>At2g42380.1 68415.m05244 bZIP transcription factor family protein
Length = 310
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 44 PDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEIQSE 193
P G SS ++ D D + + P D N NN+ N ++DE+QS+
Sbjct: 118 PTGSSSNTSTPSNSFND------DNKELPPSDHNMNNNINNNYNDEVQSQ 161
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 509 TEAITPEPTYDKENVVAD-IHTEEPQDIFPEIS-SKHTMPPEIRLYGQEFTL-SENADSP 679
T AI P P D+E V D I+ P IS + T+PP + + + T + NA +P
Sbjct: 62 TSAIAPSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLPPLLPILKENATAPTANAKAP 121
Query: 680 VPSP 691
+P
Sbjct: 122 GLNP 125
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 20 MFEQIPEIPDGKSSELGFTNDELQDCSDSEK-DLRAITPL-DKNKNNSENEIHDDEIQSE 193
+FE +P + D SELG + + + EK D + L +++ + E+E D+E + E
Sbjct: 139 LFEGLPSVLDSMGSELGDSRKKRKKKRSEEKQDHEDVDELANEDLEHEESEFSDEESEEE 198
>At1g74690.1 68414.m08650 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 587
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 437 PNPEETSETKSVEDFNVAANAMVETEAI--TPEPTYDKENVVADIHTEEPQDIFPEISSK 610
P P++T K V A + +++ P ++ +V E+P+ F ++SS+
Sbjct: 259 PQPKKTISRKPQNRLLVEAESAKPKKSVRKVPASNFESSSVQTSFEFEKPKRSFRKVSSQ 318
Query: 611 HTMPPEI 631
PP +
Sbjct: 319 SIEPPAV 325
>At4g21440.1 68417.m03099 myb family transcription factor (MYB102)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 350
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 135 NGVIALKSFSLSEQSCNSSFVNPNSELFPSGISGICSNINLWD 7
N V+ S S S + NSS++N +S I CSN+ +D
Sbjct: 296 NSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFD 338
>At3g54700.1 68416.m06052 phosphate transporter, putative strong
similarity to phosphate transporter (AtPT2) [Arabidopsis
thaliana] GI:1502430
Length = 433
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 408 SNTFSLFSKEFSMSDSTFLY--SSTWYL 331
SN+F LFSKEF L +STW+L
Sbjct: 174 SNSFGLFSKEFMKRHGLHLLGTTSTWFL 201
>At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 /
arginyltransferase 1 / arginyl-tRNA-protein transferase
1 (ATE1) identical to SP|Q9ZT48 Arginine-tRNA-protein
transferase 1 (EC 2.3.2.8) (R-transferase 1)
(Arginyltransferase 1) (Arginyl-tRNA--protein
transferase 1) {Arabidopsis thaliana}
Length = 632
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 35 PEIPDGKSSELGFTNDELQDCSDSEKDLRAITPLDKNKNNS--ENEIHDDEIQSE 193
P + + E G TND CSD ++D D + + E E D I+S+
Sbjct: 517 PAASEHEDMEQGETNDNFMGCSDEDEDEDEDDDDDDDDDEEMYETESEDSHIESD 571
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 114 SFSLSEQSCNSSFVNPNSELFPSGISGICSNINLWDS 4
SF Q C SS +P+S+LF G+S +L D+
Sbjct: 24 SFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDA 60
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +2
Query: 71 FTNDELQDCSDSEKDLRAITPLDKNKNNSENEIHDDEI 184
+ ++ L++ + +++LR LDK + + E I+D E+
Sbjct: 195 YLDERLRELDEEKEELRKYQQLDKQRKSLEYTIYDKEL 232
>At1g61390.1 68414.m06918 S-locus protein kinase, putative contains
protein kinase domain, Pfam:PF00069; contains S-locus
glycoprotein family domain, Pfam:PF00954
Length = 831
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 681 TGESAFSLKVNSCPYNLI-SGGIVCLDEISGKISWGS 574
TGE+ S N C L+ +G +V +D++SGK W S
Sbjct: 128 TGEAFTS---NKCHAELLDTGNLVVIDDVSGKTLWKS 161
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 254 IIQDSSVDILQALRS-SEVG--DEKDEDFRYQVEEYKKVESD 370
++ D+ DI+ S SE G D+ DEDF+Y+ E+ + + D
Sbjct: 206 LVDDAHTDIISIEDSESEDGNKDDDDEDFQYEDEDEDQYDQD 247
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = -3
Query: 670 CIFT*SKFLPIQSNFRGHC----VFR*NFRENILGFFSVNICNNVFFVIGWFRCNGFSFN 503
CIF S F+ S FR + VFR N L + N C + F G+ R + +N
Sbjct: 522 CIFGSSVFMKPGSIFRDYYGKVQVFRNNSNTRQLCYMCHNRCTGLIFYEGYRRNATYYYN 581
Query: 502 H 500
H
Sbjct: 582 H 582
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,359
Number of Sequences: 28952
Number of extensions: 202124
Number of successful extensions: 833
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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