Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0892
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 273 1e-74
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 79 7e-16
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 75 9e-15
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 67 2e-12
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 62 5e-11
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 56 4e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 48 1e-06
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.56
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 28 1.3
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 2.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 3.0
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 3.0
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 27 3.0
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 26 4.0
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 26 4.0
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 5.2
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 6.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 6.9
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c... 25 6.9
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 6.9
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 9.1
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 9.1
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 273 bits (670), Expect = 1e-74
Identities = 124/209 (59%), Positives = 171/209 (81%), Gaps = 1/209 (0%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLADVLTDACV 182
LHP +I++GF++A+N++L L+S K E+ RE L++VA+TSL TK+ + + L A V
Sbjct: 112 LHPSLISDGFNLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVV 171
Query: 183 DAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTC 362
DA+LTIR P +P+DLHMVEIM+M++++A++T L++GL++DHGARHPDMPK+V+NAYIL
Sbjct: 172 DAILTIRRPDEPIDLHMVEIMKMQNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILIL 231
Query: 363 NVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCD-GTDKTFVVI 539
NVSLEYEK+E+NSGFFY ++E RE+LV +ER+F+D ++RKIV LKK++C+ FV+I
Sbjct: 232 NVSLEYEKSEINSGFFYSTSEQRERLVESERKFVDNKLRKIVELKKEVCERDPTANFVII 291
Query: 540 NQKGIDPLSLDAFAKEGIIGLRRAKRRNM 626
NQKGIDPLSLD AK GI+ LRRAKRRNM
Sbjct: 292 NQKGIDPLSLDVLAKNGIMALRRAKRRNM 320
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 78.6 bits (185), Expect = 7e-16
Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 6/214 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVL-ESMKISIE-IARENLVDVARTSLKTKVHPSLADVLTDA 176
+HP I G+ +A ++++ + + + S++ + +E+L++VA+TS+ +K+ + +D +
Sbjct: 117 IHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTM 176
Query: 177 CVDAVLTIRTPGKPVD----LHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVEN 344
VDA+L+++T + + V I++ K++ E+VLVKG ++ M RV+N
Sbjct: 177 AVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQN 236
Query: 345 AYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDK 524
A I ++ L+ K + + EK+ E +RV+KI L G +
Sbjct: 237 AKIAVLDMDLQKTKMALGVHVTIDDPDQLEKIREREVMITLERVKKI------LNAGAN- 289
Query: 525 TFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNM 626
V++ KGID L L + + G + +RR K+ ++
Sbjct: 290 --VILTTKGIDDLCLKSIIEAGAMAVRRCKKEDL 321
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 74.9 bits (176), Expect = 9e-15
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISIEIARENLVDV---ARTSLKTKVHPSLADVLTD 173
+HP I +G++ A +++ L+++ ++ + EN ++ A+TSL +KV D +
Sbjct: 130 IHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFAN 189
Query: 174 ACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
VDAVL++ K VD ++++ + +T LVKG+V+D HP MP R+ENA
Sbjct: 190 IAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAK 249
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
I E K + S + E L A E+E + ++ +
Sbjct: 250 IAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHV 294
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 67.3 bits (157), Expect = 2e-12
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDAC 179
+HP +I E F A +++ ++ ++IE++ RE+L+ A TSL +K+ +++L
Sbjct: 115 IHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIA 174
Query: 180 VDAVLTIRTP--GKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGA-RHPDMPKRVENAY 350
VDAVL + P VDL + I++ +T L+ GL + A + P R+E A
Sbjct: 175 VDAVLKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKAN 234
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
I L K ++ + +K++ ER+++ +KI
Sbjct: 235 IALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYLLNMCKKI 279
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 62.5 bits (145), Expect = 5e-11
Identities = 44/210 (20%), Positives = 94/210 (44%), Gaps = 5/210 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDAC 179
+HP ++ F A +L +++ + + + + + + RT + TK+ +D++
Sbjct: 115 IHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 180 VDAVLTIRTPGK---PVDL-HMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 347
+ AV T+ + +D+ + ++ + ++ G++++ HP M +R+EN
Sbjct: 175 LRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENP 234
Query: 348 YILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKT 527
I+ + LEY K E + D +++ E E + + I+A+K L
Sbjct: 235 RIVLLDCPLEYRKGESQTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDL------- 287
Query: 528 FVVINQKGIDPLSLDAFAKEGIIGLRRAKR 617
VI +KG+ L+ K I LRR ++
Sbjct: 288 --VITEKGVSDLAQHYLLKANITALRRTRK 315
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 56.0 bits (129), Expect = 4e-09
Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 5/166 (3%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKI--SIEIA--RENLVDVARTSLKTKVHPSLADVLT 170
+HP++I +G+ IA +++ L + I S + A R +L ++ART+L +K+ +
Sbjct: 117 IHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFA 176
Query: 171 DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
VDAVL ++ +L ++I+++ ++ L +G +++ + PK +ENA
Sbjct: 177 QLAVDAVLRLK---GSTNLDNIQIIKILGGKLDDSFLDEGFILNK-TIGVNCPKVMENAN 232
Query: 351 ILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
IL N +++ +K +V + + +L AERE + +V KI
Sbjct: 233 ILIANTAMDTDKVKVFGARVRVDTTGKLAELERAEREKMKAKVEKI 278
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 47.6 bits (108), Expect = 1e-06
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Frame = +3
Query: 36 IARNKSLEVLESMKISIE-IARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPG 212
+A NK E+ + +S E R+ L A T++ +K+ S + T VDAVLT+
Sbjct: 135 LAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTL--DQ 192
Query: 213 KPVDLHMVEIMEMKHKTATETVLVKGLVMDHG---ARHPDMPKRVENAYILTCNVSLEYE 383
+ ++ +M+ I ++ +++LVKG+ A PK +N IL +V LE +
Sbjct: 193 EDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELELK 252
Query: 384 KTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKL 506
+ N+ ++ + +V AE I ++ IVA K+
Sbjct: 253 AEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAKV 293
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 29.1 bits (62), Expect = 0.56
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 387 TEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKG 551
T+ +FY+ + ER + KI+ KK L G+ F+ ++ G
Sbjct: 395 TKTGKAYFYQQLQGERWRFLCERALQSSSITKIIHAKKSLSSGSSGLFIFMSLDG 449
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 84 IEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHK 260
I I L D++ T K VHPS++ L A + L +++ G + ++VE +HK
Sbjct: 7 ILITPSPLSDISTTINKPNVHPSMS--LLKALPECRLVVKSKGDKNNANVVEFPLDRHK 63
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 189 PHQRKHQLAHLQGLGGP*F*VKY 121
PHQR H A L GGP F + Y
Sbjct: 63 PHQRAHNAAALARSGGPGFSMNY 85
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 318 PDMPKRVENAYILTCNVSLEYEK-TEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVAL 494
P KR ++ +L C L K + V+S E+R++ E+E R+++
Sbjct: 327 PFTTKRATHSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERK 386
Query: 495 KKKLCDGTD 521
KKKL T+
Sbjct: 387 KKKLAKYTE 395
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 275 CTCKRSSNGSWCTSPRYAKACRKC 346
C +R SNG WCT K C
Sbjct: 973 CIIERDSNGRWCTKHLQRKTKEVC 996
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 637 LDVPILRLFALRSPIIPSLAKASS 566
LD+ ++R A R IIP++AKA S
Sbjct: 181 LDIELMRRLAPRVNIIPAIAKADS 204
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 312 RHPDMPKRVENAYIL 356
RHPD+PK+ +A+IL
Sbjct: 142 RHPDVPKKPSSAFIL 156
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 360 CNVSLEYEKTEVNSGFFYKS 419
CN L ++ TE NSG+ YK+
Sbjct: 162 CNGGLRWQITEFNSGYNYKN 181
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/43 (25%), Positives = 27/43 (62%)
Frame = +3
Query: 45 NKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLADVLTD 173
++SL++L+ + ++ ++ VD+ART ++ S ++V+ D
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIARTEYFITIY-SDSNVILD 311
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +3
Query: 60 VLESMKISIEIARENLVDVARTSLKTKVHPSLADVLTDACV 182
++E ++I+ + ++D + S + + ++AD+ D CV
Sbjct: 481 IIEGELVAIDKSNGQILDFQKLSTRERKKVTVADITIDVCV 521
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 318 PDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDR 431
PD V+NA + T +++ T V+ GF + + R
Sbjct: 11 PDFASDVDNASLFTQSIATTSASTSVDDGFSFDDSISR 48
>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/49 (22%), Positives = 21/49 (42%)
Frame = +3
Query: 222 DLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNV 368
+L + + + + TV K L+ G D+P ++ I CN+
Sbjct: 43 ELDALTTISLDELNKSPTVFTKNLLQGCGGTDLDVPAELKRLVIFVCNI 91
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 18 ITEGFDIARNKSLEVLESMKI 80
I EGF IAR K +E LE +K+
Sbjct: 448 IAEGFLIARAKRVESLERVKV 468
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 634 DVPILRLFALRSPIIPSLAKASSDK 560
++PIL + PI+PS+ ++S K
Sbjct: 159 EIPILLTYMTEDPIVPSVLSSASAK 183
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 598 PIIPSLAKASSDKGSIPFWLITTK 527
P+ P +A D GSI W + K
Sbjct: 308 PVFPCVASVGLDSGSIYIWAVEQK 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,656
Number of Sequences: 5004
Number of extensions: 44008
Number of successful extensions: 137
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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