Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0892
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 261 4e-70
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 82 4e-16
10_08_0620 - 19321612-19323237 73 2e-13
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 69 2e-12
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 65 5e-11
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 64 7e-11
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 62 5e-10
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 53 2e-07
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 42 4e-04
02_02_0480 + 10799242-10799365,10799748-10800044,10800081-108002... 33 0.25
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 31 1.0
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 29 2.3
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 29 4.1
06_01_0905 - 6974369-6974456,6974647-6974777 29 4.1
09_04_0662 + 19296395-19296532,19296650-19296742,19296976-192971... 28 7.1
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615... 28 7.1
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 28 7.1
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 27 9.4
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 261 bits (639), Expect = 4e-70
Identities = 133/227 (58%), Positives = 164/227 (72%), Gaps = 20/227 (8%)
Frame = +3
Query: 6 HPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKV---------- 143
HPR + +GFD+A+ +LE LE K S+ E RE L +ART+L+TKV
Sbjct: 114 HPRFLVDGFDVAKRATLEFLEKFKTSVVMGDEPDREILKMIARTTLRTKVGAVCFLAFKL 173
Query: 144 ------HPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDH 305
+ LAD LTD V+AVL IR P +P+DL MVEIM M+HK +T LV+GLV+DH
Sbjct: 174 SLLGQLYEGLADQLTDIVVNAVLCIRKPDEPIDLFMVEIMHMRHKFDVDTRLVEGLVLDH 233
Query: 306 GARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
G+RHPDM +R EN YILTCNVSLEYEK+E+N+GFFY +AE REK+VAAER +D+RV++I
Sbjct: 234 GSRHPDMKRRAENCYILTCNVSLEYEKSEINAGFFYSNAEQREKMVAAERRQVDERVKRI 293
Query: 486 VALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNM 626
+ LK K+C G DK FVVINQKGIDP SLD A+ GIIGLRRAKRRNM
Sbjct: 294 IELKNKVCAGNDKNFVVINQKGIDPPSLDLLARAGIIGLRRAKRRNM 340
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 81.8 bits (193), Expect = 4e-16
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Frame = +3
Query: 6 HPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDACV 182
HP + +++EVL +M I IE++ R++LV A T+L +KV + +L+ V
Sbjct: 123 HPTAAADALHRLATRAVEVLHAMAIPIELSDRDSLVKSASTALNSKVVSQYSSLLSPLAV 182
Query: 183 DAVLTIRTPGKP--VDLHMVEIMEMKHKTATETVLVKGLVMDHGARHP-DMPKRVENAYI 353
DA L++ P P +DL + +++ T +T L++GL+ D A H P RVENA I
Sbjct: 183 DAALSVVDPAHPDLLDLRDIRVVKKLGGTVDDTELIRGLIFDKKASHAAGGPTRVENAKI 242
Query: 354 LTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVA 491
+ KT++ ++++ ER +I V+KI A
Sbjct: 243 AVIQFQVSPPKTDIEQSVIVSDYAQMDRILREERNYILGMVKKIKA 288
>10_08_0620 - 19321612-19323237
Length = 541
Score = 72.9 bits (171), Expect = 2e-13
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Frame = +3
Query: 6 HPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDACV 182
HP + + +++EVL M I +E++ R+ LV A T+L +KV + +L+ V
Sbjct: 127 HPTAAADALHLLAARAVEVLHGMAIPVELSDRDALVKSASTALNSKVVSQYSTLLSPLAV 186
Query: 183 DAVLTIRTPGKP--VDLHMVEIMEMKHKTATETVLVKGLVMDHGARH-PDMPKRVENAYI 353
DA L + P P +DL + +++ T +T L++GLV++ A H P R+ +A I
Sbjct: 187 DAALAVVDPAHPYLLDLRDIRVVKKLGCTVDDTELIRGLVLNKKASHVAGGPTRIGDAKI 246
Query: 354 LTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVA 491
+ KT++ ++++ ER +I V+KI A
Sbjct: 247 AVIQFQVSPPKTDIEHSVVVSDYAQMDRILREERNYILGMVKKIKA 292
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 69.3 bits (162), Expect = 2e-12
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISIEIAREN---LVDVARTSLKTKVHPSLADVLTD 173
+HP I EG+++A + + LE + E + N LV T+L +K+ L +
Sbjct: 124 IHPIRIAEGYELASRIAFDHLEHISHKFEFSATNIEPLVQTCMTTLSSKIVNRCKRTLAE 183
Query: 174 ACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
V AVL + K V+L ++++ +T LV G+++D HP MPKR+E+A
Sbjct: 184 IAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKRIEDAK 243
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRK 482
I E K + + E + L E+++ D+ V+K
Sbjct: 244 IAILTCPFEPPKPKTKHKVDIDTVEKFQMLREQEQKYFDEMVQK 287
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 64.9 bits (151), Expect = 5e-11
Identities = 48/211 (22%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
Frame = +3
Query: 6 HPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDACV 182
HP +I + A + +L VL+ + I +++ R ++ + ++S+ TK D++ D +
Sbjct: 118 HPTVICRAYTKALDDALSVLDKIAIPVDVDDRVAMLGLVKSSIGTKFTGQFGDLIADLAI 177
Query: 183 DAVLTIRTP---G-KPVDLHM-VEIMEMKHKTATETVLVKGLVMDHGARHPD-MPKRVEN 344
DA T G + VD+ +++ ++ ++ ++KG++++ P M +++ N
Sbjct: 178 DATTTAGVDLGQGIREVDIKKYIKVEKVPGGQLEDSKVLKGVMINKDVVAPGKMRRKIVN 237
Query: 345 AYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDK 524
I+ + LEY+K E + ED + ++ E E+I+ +I+ K L
Sbjct: 238 PRIILLDCPLEYKKGENQTNAELMKEEDWQVMLQMEEEYIENLCAQILKFKPDL------ 291
Query: 525 TFVVINQKGIDPLSLDAFAKEGIIGLRRAKR 617
VI +KG+ L++ K G+ +RR ++
Sbjct: 292 ---VITEKGLSDLAVHYLGKAGVSAIRRLRK 319
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 64.5 bits (150), Expect = 7e-11
Identities = 44/167 (26%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = +3
Query: 3 LHPRIITEGF----DIARNKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLADVLT 170
+HP I G+ + ARN LE K +I+ R +L+++A T+L +K+ +
Sbjct: 114 IHPMTIIAGYRMAVECARNALLERTMDNKENIDKFRSDLMNIAMTTLSSKILSQDKEYFA 173
Query: 171 DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
+ VDAVL ++ +L ++I+++ + ++ L +G ++D PKR+ENA
Sbjct: 174 ELAVDAVLRLKGS---TNLEAIQILKIPGGSLKDSFLDEGFILDKKIGL-GQPKRIENAK 229
Query: 351 ILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 488
IL N +++ +K ++ + S ++ AAE++ + ++V+KI+
Sbjct: 230 ILVANTAMDTDKVKIYGARVRVDSMAKVAEIEAAEKQKMREKVQKII 276
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 61.7 bits (143), Expect = 5e-10
Identities = 45/211 (21%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Frame = +3
Query: 6 HPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDACV 182
HP +I + A +L VL+ + + +++ R ++ + ++S+ TK D++ D +
Sbjct: 118 HPTVICRAYTKALEDALAVLDKIAMHVDVNDRAAMLGLVKSSIGTKFTGQFGDLIADLAI 177
Query: 183 DAVLT----IRTPGKPVDLHM-VEIMEMKHKTATETVLVKGLVMDHGARHPD-MPKRVEN 344
DA T + + VD+ +++ ++ ++ ++KG++ + P M +++ N
Sbjct: 178 DATTTAGVDLGQGMREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVN 237
Query: 345 AYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDK 524
I+ + +EY+K E + ED + L+ E E+I +I+ K L
Sbjct: 238 PRIILLDCPVEYKKGENQTNAELMKEEDWQVLLEMEEEYIKNLCAQILKFKPDL------ 291
Query: 525 TFVVINQKGIDPLSLDAFAKEGIIGLRRAKR 617
V+ +KG+ L++ +K G+ +RR ++
Sbjct: 292 ---VVTEKGLSDLAIHYLSKAGVSAIRRLRK 319
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 52.8 bits (121), Expect = 2e-07
Identities = 35/143 (24%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = +3
Query: 63 LESMKISIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEI 242
+ M I + R +L+++A T+L +K+ + VDAVL ++ +L ++I
Sbjct: 115 IHPMTIIADKFRSDLMNIAMTTLSSKILSQDKEYFAGLAVDAVLRLKGS---TNLEAIQI 171
Query: 243 MEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEV-NSGFFYKS 419
++ + ++ L +G ++D PKR+ENA IL N +++ +K ++ + S
Sbjct: 172 LKKTGGSLKDSFLDEGFILDKKIGL-GQPKRIENAKILVANTAMDTDKVKIYGARVRVDS 230
Query: 420 AEDREKLVAAEREFIDQRVRKIV 488
++ AAE++ + ++V+KI+
Sbjct: 231 MAKVAEIEAAEKQKMREKVQKII 253
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 41.9 bits (94), Expect = 4e-04
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESM----KISIEIA-RENLVDVARTSLKTKVHPSLADVL 167
LHP I G+ A NK++E+LE + ++++ +E +V + R+++ +K D+L
Sbjct: 118 LHPSEIIIGYTKAINKTVEILEDLVEKGSENMDVRNKEEVVLLMRSAVASKQF-GQEDIL 176
Query: 168 TDACVDAVLTIRTPGKPVDLHM--VEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVE 341
DA + + P P + ++ V + ++ + +V+G+V+ + A KRVE
Sbjct: 177 CPLVADACMQV-CPKNPANFNVDNVRVAKLLGGGLHNSSVVRGMVLKNDA--VGSIKRVE 233
Query: 342 NAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
A I ++ TE SAE E E +++ ++ +
Sbjct: 234 KAKIAVFAGGVDTSATETKGTVLIHSAEQLENYAKTEEAKVEELIKAV 281
>02_02_0480 +
10799242-10799365,10799748-10800044,10800081-10800248,
10800525-10800805,10800860-10801205,10801425-10801428,
10801533-10801575
Length = 420
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 300 DHGARHPDMPKR--VENAYILTCNVSLEYEKTEVNSGFFYKSAE 425
D A HPD R V +AY L CN+SL+ EK+ + + + E
Sbjct: 175 DFLAWHPDKTGRFSVRSAYSLACNISLDVEKSRFGNEWLFDMLE 218
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 303 HGARHPDMPKRVE-NAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVR 479
+ A D PK+VE +L LEY +T++ YKS D ER D+ R
Sbjct: 606 NSAVQEDAPKKVEVEKQVLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASSDK--R 663
Query: 480 KIVALKKK 503
++ +L KK
Sbjct: 664 EVESLAKK 671
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +3
Query: 273 TVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAE 452
+ +VKG+V H M R+E +L +LEY++ + L+ E
Sbjct: 449 STVVKGVVCKKNVAHRRMTSRIEKPRLLLLAGALEYQRVT-------NQLSSIDTLLQQE 501
Query: 453 REFIDQRVRKIVALKKKL 506
+ + V KIVA K L
Sbjct: 502 TDHLKMAVAKIVAQKPNL 519
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 282 VKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEK 386
VKG+V +H M +NA +L +LEY+K
Sbjct: 349 VKGIVCSKNVKHKRMVSEHQNATLLILGGALEYQK 383
>06_01_0905 - 6974369-6974456,6974647-6974777
Length = 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 535 LSTKKESTPCHWMLLP 582
+S KKES+P HW +LP
Sbjct: 56 ISGKKESSPLHWKILP 71
>09_04_0662 +
19296395-19296532,19296650-19296742,19296976-19297128,
19297213-19297596
Length = 255
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 348 YILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALK 497
YIL V+L+Y + GFF S + ++ ++ I + R ++A++
Sbjct: 177 YILDNTVALKYLTLDTTRGFFSCSTGEHDRCFPMDKIMITEAKRAVLAIQ 226
>08_02_0744 -
20659326-20659580,20659748-20660005,20660103-20661575,
20661677-20661835,20661948-20662074,20662155-20662486,
20662574-20663383,20663772-20664110,20664187-20664340,
20664427-20665143,20665699-20665967
Length = 1630
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 267 TETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEK 386
+++ LV+G+V +H M NA +L +LEY+K
Sbjct: 327 SDSNLVRGVVCSKNVKHKRMASEHVNAKLLILGGALEYQK 366
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 414 KSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKG 551
+S ++ E A + E QRV+ V + +++ D K+ V I+Q+G
Sbjct: 1347 QSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQG 1392
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.5 bits (58), Expect = 9.4
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Frame = +3
Query: 267 TETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEK-TEVNSGFFYKSAEDREKLV 443
+++ +VKG+V H M R E IL +LEY++ + + S F + L+
Sbjct: 467 SDSFVVKGVVCKKNVAHRRMASRKEKPRILILGGALEYQRISNLLSSF--------DTLL 518
Query: 444 AAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKR 617
E +++ V KI A + VV+ +K + + D F ++ I + KR
Sbjct: 519 QQETDYLKMAVAKIKA---------HQPSVVLVEKSVSRYAQDLFLEKNISLVLNIKR 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,399
Number of Sequences: 37544
Number of extensions: 270381
Number of successful extensions: 688
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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