Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0892
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)              128   4e-30
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  80   2e-15
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   59   3e-09
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      36   0.021
SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        29   3.2  
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     29   4.2  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       28   5.5  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)                    28   7.3  
SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)              28   7.3  
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.7  
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   9.7  
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score =  128 bits (309), Expect = 4e-30
 Identities = 56/91 (61%), Positives = 78/91 (85%)
 Frame = +3

Query: 3   LHPRIITEGFDIARNKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLADVLTDACV 182
           LHPR++TEGF++A+ K+LEVLE +K+S E+ R+ L++VA+TSL+TKV   LAD+LT+  V
Sbjct: 216 LHPRLVTEGFEVAKKKALEVLEEVKVSREMDRDTLINVAKTSLRTKVRTELADLLTEVVV 275

Query: 183 DAVLTIRTPGKPVDLHMVEIMEMKHKTATET 275
           DAVLTIR P KP+DLHMVE+MEM+HKT +++
Sbjct: 276 DAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 41/79 (51%), Positives = 56/79 (70%)
 Frame = +3

Query: 312 RHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVA 491
           R P  P  +    ++      + +  EVNSGFFYKS+E+REKLVAAER+F D +V+KI+ 
Sbjct: 282 RKPKKPIDLHMVEVMEMRHKTDSDSNEVNSGFFYKSSEEREKLVAAERKFTDDKVQKIID 341

Query: 492 LKKKLCDGTDKTFVVINQK 548
           LKK++C+G +K FVVINQK
Sbjct: 342 LKKQVCEGNNKGFVVINQK 360


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
 Frame = +3

Query: 3   LHPRIITEGFDIARNKSLEVLESMKISIEIAREN---LVDVARTSLKTKVHPSLADVLTD 173
           +HP  I +G+++A   +LE ++S+  +  + ++N   L+  A T+L +K+       L +
Sbjct: 126 IHPIRIADGYELAAKIALEHMDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHRPLAE 185

Query: 174 ACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
             VDAVL++     K VD  ++++   +     +TVLVKG+V+D    HP MPK V++A 
Sbjct: 186 IAVDAVLSVADLERKDVDFELIKVEGKEGGKLDDTVLVKGVVVDKDMSHPQMPKVVKDAK 245

Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
           I       E  K +        + ED +KL   ERE   + ++++
Sbjct: 246 IAILTCPFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQV 290


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 5/167 (2%)
 Frame = +3

Query: 3   LHPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKVHPSLADVLT 170
           +HP+ I  G+  +   + + LE+  +      E  RE+L+++ART+L +K+     D   
Sbjct: 118 IHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFA 177

Query: 171 DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
              VDAVL ++  G   DL+ ++I++       ++ L +G ++D      + PK++ENA 
Sbjct: 178 KLAVDAVLRLKGSG---DLNAIQIIKKLGGGMVDSFLDEGFLLDKKI-GVNQPKKIENAK 233

Query: 351 ILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 488
           IL  N  ++ +K +V  S     S      L  AE++ + ++V  I+
Sbjct: 234 ILIANTPMDADKIKVFGSRVRVDSTAKIADLEMAEKQKMKEKVEMII 280


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 28/89 (31%), Positives = 43/89 (48%)
 Frame = +3

Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTF 530
           +L CN  LEY+K E  +     S  D  +++  E EFI +   +++ALK  L        
Sbjct: 2   LLDCN--LEYKKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDL-------- 51

Query: 531 VVINQKGIDPLSLDAFAKEGIIGLRRAKR 617
            VI +KGI  L+     K  I  +RR ++
Sbjct: 52  -VITEKGISDLAQHFLMKANITAIRRVRK 79


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
 Frame = +3

Query: 3   LHPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKVHPSLADVLT 170
           +HP+ I  G+  +   + + LE+  +      E  R++L+++ART+L +K+     D   
Sbjct: 36  IHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFA 95

Query: 171 DACVDAVLTIRTPGKPVDLHMVEIME 248
              VDAVL ++  G   DL+ ++I++
Sbjct: 96  KLAVDAVLRLKGSG---DLNAIQIIK 118


>SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 321 DMPKRVENAYILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 488
           + PK++ENA IL  N  ++ +K +V  S     S     +L  AE++ +  +V  I+
Sbjct: 8   NQPKKIENAKILIANTPMDADKVKVFGSRVRVDSTAKIAELEKAEKQKMKDKVEMII 64


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 275 CTCKRSSNGSWCTS--PRY-AKACRKCIHSHM 361
           CTC+   +GS C S  PRY    C +C+ +++
Sbjct: 397 CTCRHGFSGSSCESCQPRYTGSECERCVTNYI 428


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
 Frame = +3

Query: 180 VDAVLTIRTP-----------GKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 326
           V+AV+ I+TP           G P  +H+ + +++K+K     V+    ++D+  +   M
Sbjct: 467 VEAVMKIKTPYGMQFRWRLPGGMPFHIHLKDNLKVKNKKRWSQVMYMSYILDY--KEGTM 524

Query: 327 PKRVENAYILTCNVSLEY 380
               EN YIL  +  + +
Sbjct: 525 GSTDENTYILATDADVRF 542


>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 165 LTDACVDAVLTIRT--PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGAR 314
           LT    D +L +R+  PG+ V+ HM++ ++ K  T  E +    L   H +R
Sbjct: 124 LTPDVNDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEAITTATLARSHYSR 175


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 88   SIEIFIDSKTSNDLLRAMSKPS 23
            SIE+F+DS + ND+  A+ +P+
Sbjct: 1709 SIELFVDSTSENDVFTAVDEPN 1730


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 212 QTC*SAHG*NYGDETQDCY*NCTCKRSSNGSWCTSP 319
           QTC   HG N+    QDC  N  C+   +    TSP
Sbjct: 767 QTCSVCHGKNFIIRCQDCVHNFLCQSCDDFVHTTSP 802


>SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 523 RLSSLSTKKESTPCHWMLLPKKVLLDYAEQK 615
           RLS L  KK+   CH +L  +   LD  +QK
Sbjct: 241 RLSKLENKKQKMECHDLLADRHSKLDNEKQK 271


>SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)
          Length = 384

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 417 SAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGI 554
           ++EDR   V   +  +D+++ + +AL K L    ++TF  I +KG+
Sbjct: 2   ASEDRPPEVNTGKPELDEKILEWLALDKGLAVYLEQTFEDIKEKGV 47


>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1533

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 117 ARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLV 296
           +R   +  +HPSLA+ L        L +     P      E++ M  + A     VK  +
Sbjct: 103 SRQGRQVTLHPSLAEFLNTLMRPLSLELEQMEPPSSAKRPELVTMHGRHAIIRHRVKVHL 162

Query: 297 MDHGARHPD 323
           MD+ A  PD
Sbjct: 163 MDYCATEPD 171


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/65 (23%), Positives = 36/65 (55%)
 Frame = +3

Query: 330 KRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLC 509
           ++++N  +   N S + E TE+ +       E++ +++    E + ++ ++I  LKKK+ 
Sbjct: 595 RQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKKII 649

Query: 510 DGTDK 524
           + +DK
Sbjct: 650 ELSDK 654


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 272 NCTCKRSSNGSWCTSPRY 325
           NCTCK S++G+ C   R+
Sbjct: 845 NCTCKNSTDGAKCAECRF 862


>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +3

Query: 72  MKISIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEM 251
           M+IS E+  +N +D    +LKT +H  +      AC  A  T++TP +   +   + ++ 
Sbjct: 256 MEIS-ELRVKN-IDAHADTLKTHLHTHMQTCYRHACRHATDTLQTPHRHATVTHADTLQT 313

Query: 252 KHKTATET 275
           + ++  +T
Sbjct: 314 RMQSRMQT 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,082,122
Number of Sequences: 59808
Number of extensions: 335339
Number of successful extensions: 1042
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)