Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0892
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 263 8e-71
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 261 2e-70
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 89 3e-18
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 68 5e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 68 6e-12
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 68 6e-12
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 56 1e-08
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 36 0.017
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 29 2.6
At4g25160.1 68417.m03622 protein kinase family protein contains ... 29 2.6
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 29 2.6
At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta... 28 4.5
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi... 28 6.0
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi... 28 6.0
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi... 28 6.0
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 28 6.0
At3g51490.1 68416.m05639 sugar transporter family protein simila... 27 7.9
At1g42980.1 68414.m04948 formin homology 2 domain-containing pro... 27 7.9
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 263 bits (644), Expect = 8e-71
Identities = 123/212 (58%), Positives = 164/212 (77%), Gaps = 4/212 (1%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKVHPSLADVLT 170
+HPR++ +GF+IA+ +L+ L++ K + E +E L VART+L+TK++ LAD LT
Sbjct: 113 MHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLT 172
Query: 171 DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
D V++VL IR P +P+DL MVEIM M+HK +T LV+GLV+DHG+RHPDM +R EN +
Sbjct: 173 DIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCH 232
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTF 530
ILTCNVSLEYEK+E+N+GFFY +AE RE +V AER +D+RV+KI+ LK K+C G D +F
Sbjct: 233 ILTCNVSLEYEKSEINAGFFYSNAEQREAMVTAERRSVDERVQKIIELKNKVCAGNDNSF 292
Query: 531 VVINQKGIDPLSLDAFAKEGIIGLRRAKRRNM 626
V++NQKGIDP SLD A+EGII LRRAKRRNM
Sbjct: 293 VILNQKGIDPPSLDLLAREGIIALRRAKRRNM 324
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 261 bits (640), Expect = 2e-70
Identities = 125/212 (58%), Positives = 165/212 (77%), Gaps = 4/212 (1%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKVHPSLADVLT 170
+HPR++ +GF+IA+ +L+ L++ K + E+ +E L VART+L+TK++ LAD LT
Sbjct: 113 MHPRVLVDGFEIAKRATLQFLDNFKTPVVMGDEVDKEILKMVARTTLRTKLYEGLADQLT 172
Query: 171 DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
D V++VL IR P + +DL MVEIM M+HK +T LV+GLV+DHG+RHPDM +R EN +
Sbjct: 173 DIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCH 232
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTF 530
ILTCNVSLEYEK+E+N+GFFY +AE RE +V AER +D+RV+KI+ LKKK+C G + F
Sbjct: 233 ILTCNVSLEYEKSEINAGFFYSNAEQREAMVTAERRSVDERVKKIIELKKKVC-GDNDNF 291
Query: 531 VVINQKGIDPLSLDAFAKEGIIGLRRAKRRNM 626
VVINQKGIDP SLD A+EGIIGLRRAKRRNM
Sbjct: 292 VVINQKGIDPPSLDLLAREGIIGLRRAKRRNM 323
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 88.6 bits (210), Expect = 3e-18
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 4/167 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDAC 179
+HP +I++ A K++++L +M + +E+ R++LV A TSL +KV + +L
Sbjct: 124 IHPTVISDSLHKACGKAIDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPLA 183
Query: 180 VDAVLTIRTPGKP--VDLHMVEIMEMKHKTATETVLVKGLVMDHG-ARHPDMPKRVENAY 350
VDAVL++ P KP VDL ++I++ T +T VKGLV D +R P RVENA
Sbjct: 184 VDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDTHTVKGLVFDKKVSRAAGGPTRVENAK 243
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVA 491
I + KT++ ++++ ER +I ++KI A
Sbjct: 244 IAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKA 290
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 68.1 bits (159), Expect = 5e-12
Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
Frame = +3
Query: 6 HPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVARTSLKTKVHPSLADVLTDACV 182
HP +I + A S+ VL+ + +SI+I R ++ + ++ + TK D++ D +
Sbjct: 116 HPTVICRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADLAI 175
Query: 183 DAVLTIRTP---G-KPVDLHM-VEIMEMKHKTATETVLVKGLVMDHGARHPD-MPKRVEN 344
DA T+ G + VD+ +++ ++ ++ ++KG++ + P M +++ N
Sbjct: 176 DATTTVGVDLGQGLREVDIKKYIKVEKVPGGQFEDSEVLKGVMFNKDVVAPGKMKRKIVN 235
Query: 345 AYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDK 524
I+ + LEY+K E + ED E L+ E E+I+ +I+ K L
Sbjct: 236 PRIILLDCPLEYKKGENQTNAELVREEDWEVLLKLEEEYIENICVQILKFKPDL------ 289
Query: 525 TFVVINQKGIDPLSLDAFAKEGIIGLRRAKR 617
VI +KG+ L+ F+K G+ +RR ++
Sbjct: 290 ---VITEKGLSDLACHYFSKAGVSAIRRLRK 317
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 67.7 bits (158), Expect = 6e-12
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLE--SMKISIEIAR-ENLVDVARTSLKTKVHPSLADVLTD 173
+HP I EG+++A ++E LE + K ++ E LV T+L +K+ L +
Sbjct: 48 IHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAE 107
Query: 174 ACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
V AVL + + V+L ++++ +T L+ G+++D HP MPK++E+A+
Sbjct: 108 IAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIEDAH 167
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRK 482
I E K + + E E L E+++ D+ V+K
Sbjct: 168 IAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 67.7 bits (158), Expect = 6e-12
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLE--SMKISIEIAR-ENLVDVARTSLKTKVHPSLADVLTD 173
+HP I EG+++A ++E LE + K ++ E LV T+L +K+ L +
Sbjct: 124 IHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAE 183
Query: 174 ACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
V AVL + + V+L ++++ +T L+ G+++D HP MPK++E+A+
Sbjct: 184 IAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIEDAH 243
Query: 351 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRK 482
I E K + + E E L E+++ D+ V+K
Sbjct: 244 IAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 56.4 bits (130), Expect = 1e-08
Identities = 42/167 (25%), Positives = 84/167 (50%), Gaps = 5/167 (2%)
Frame = +3
Query: 3 LHPRIITEGF----DIARNKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLADVLT 170
+HP I G+ + ARN L+ + K + E R +L+ +A T+L +K+ +
Sbjct: 116 IHPMTIIAGYRMASECARNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFA 175
Query: 171 DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 350
+ VDAV ++ +L ++I++ + ++ L +G ++D PKR+ENA
Sbjct: 176 EMAVDAVFRLKGS---TNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAN 231
Query: 351 ILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 488
IL N +++ +K ++ + S ++ AE+E + +V+KI+
Sbjct: 232 ILVANTAMDTDKVKIYGARVRVDSMTKVAEIEGAEKEKMKDKVKKII 278
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 36.3 bits (80), Expect = 0.017
Identities = 34/171 (19%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Frame = +3
Query: 3 LHPRIITEGFDIARNKSLEVLESM----KISIEIA-RENLVDVARTSLKTK---VHPSLA 158
LHP I G+ A +K++E+LE + ++++ ++ ++ R ++ +K +
Sbjct: 123 LHPSEIISGYTKAVSKAVEILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEIIC 182
Query: 159 DVLTDACVDAVLTIRTPGKPVDLHM--VEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 332
++TDAC+ P P + ++ V + ++ + +V+G+V+ A K
Sbjct: 183 SLVTDACIQV-----CPKNPTNFNVDNVRVSKLLGGGLHNSCIVRGMVLKSDA--VGSIK 235
Query: 333 RVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKI 485
R+E A + ++ TE SAE E E +++ ++ +
Sbjct: 236 RMEKAKVAVFAGGVDTTATETKGTVLIHSAEQLENYAKTEEAKVEELIKAV 286
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 267 TETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEK 386
+E+++VKG+V H M ++E +L +LEY++
Sbjct: 438 SESMVVKGVVCKKNVAHRRMTSKIEKPRLLILGGALEYQR 477
>At4g25160.1 68417.m03622 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 835
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +3
Query: 42 RNKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPV 221
+++ L LE++K E AR + V+ + P L DV+ + CV A G
Sbjct: 738 KDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLKDVMNEPCVAA------DGYTY 791
Query: 222 DLHMVEIMEMKHKTATET 275
D H +E +H T+ T
Sbjct: 792 DRHAIEEWLKEHNTSPMT 809
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 228 ADQQVCLEFEW*VPHQRKHQLAHLQGLG 145
+ + +CL ++ PH +KH+ HL +G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
glutamyl-tRNA synthetase, putatuve / GluRS, putative
identical to gi:3435196
Length = 719
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 366 VSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTD 521
+ ++YEK S +F + + EKL+ + ++D R+ ++K+ DG D
Sbjct: 275 LGIKYEKVTYTSDYFPELMDMAEKLMREGKAYVDDTPRE--QMQKERMDGID 324
>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 EGFDIARNKSLEVLESMK-ISIEIARENLVDVARTSLKTKV-----HPSLADVLTDACVD 185
EGF I N + E+LESMK S E +++VA SL ++ SL ++ D C +
Sbjct: 316 EGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCAN 375
Query: 186 AVL 194
V+
Sbjct: 376 FVI 378
>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 EGFDIARNKSLEVLESMK-ISIEIARENLVDVARTSLKTKV-----HPSLADVLTDACVD 185
EGF I N + E+LESMK S E +++VA SL ++ SL ++ D C +
Sbjct: 316 EGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCAN 375
Query: 186 AVL 194
V+
Sbjct: 376 FVI 378
>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 753
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 EGFDIARNKSLEVLESMK-ISIEIARENLVDVARTSLKTKV-----HPSLADVLTDACVD 185
EGF I N + E+LESMK S E +++VA SL ++ SL ++ D C +
Sbjct: 338 EGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCAN 397
Query: 186 AVL 194
V+
Sbjct: 398 FVI 400
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 270 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEK 386
E++L++G+V H M + +N ++ SLEY++
Sbjct: 396 ESILIRGIVCSKNITHKRMISQYKNPRVMLLAGSLEYQR 434
>At3g51490.1 68416.m05639 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 729
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 550 PFWLITTKVLSVPSHSFFLRATIFL 476
P W + VLS+PS ++F+ A FL
Sbjct: 161 PSWRLMLGVLSIPSIAYFVLAAFFL 185
>At1g42980.1 68414.m04948 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains Pfam
profile PF02181: Formin Homology 2 Domain
Length = 299
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 342 NAYILTCNVSLEY-EKTEVNSGF---FYKSAEDREKLVAAEREFIDQRVRKI 485
N+YI + + E T + + F FYKS E+ E+ AE+E +++R I
Sbjct: 242 NSYIAEYPSGVRFKEATNILTRFVETFYKSREEIERQAEAEKEILEKRKMNI 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,522
Number of Sequences: 28952
Number of extensions: 228224
Number of successful extensions: 656
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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