Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0891
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.94 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.2  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   3.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 298 GDPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID 447
           GDP      +TL   D W++  + +  + I T +    F  +K    G+D
Sbjct: 21  GDPTERDLIVTLDDRDLWLR-FECLTNEMIVTKNGRRMFPVVKVTAAGLD 69


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 313 DGKAITLSQSDKWMKQAKVIDGKKITTTDTAIH-FKKLKSVKLGIDDYQKFLDDLAKNKK 489
           D + + L+ S + ++Q K++   +       +  F++L   K   D Y+KF +  +KN K
Sbjct: 379 DSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFEELAEDK---DGYKKFYEQFSKNIK 435

Query: 490 VELDE 504
           + + E
Sbjct: 436 LGIHE 440


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 101 LCDDIIYASESVADRRLSDA 42
           LC  IIYA  ++ D +L++A
Sbjct: 550 LCTHIIYAFATLKDHKLAEA 569


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 519 QLLLNFVKFHFFVLREII*KLLVVVDAEFYRFEFFEVNSRVRCCYFL---SINNFGLF 355
           Q ++ F+K+HFF   ++  +L       F  F   EV   V+ CY L   ++   G+F
Sbjct: 81  QFIVRFMKYHFFGTLKLWSQL-------FSTFAGIEVLHVVKQCYHLQKINVQQSGIF 131


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 546 ITRYKITGS-RSGRRSIDRHEQIY 614
           IT Y +      GR+ + +H+QIY
Sbjct: 11  ITDYDLNNEFYRGRKKLSKHQQIY 34


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 477 REII*KLLVVVDAEFYRFE 421
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 477 REII*KLLVVVDAEFYRFE 421
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 477 REII*KLLVVVDAEFYRFE 421
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 477 REII*KLLVVVDAEFYRFE 421
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 407 IAVSVVVIFFPSITLACF 354
           I + +V++FF   +L CF
Sbjct: 61  IHIKIVLMFFKEASLYCF 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.309    0.124    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,829
Number of Sequences: 336
Number of extensions: 3013
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)