Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0891
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.4  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    25   7.1  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.4  

>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 478 KNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQ 630
           K+KK E++++++K+T   +P +     K+ +A +     T  S+ +  H++
Sbjct: 120 KDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVETPETIESEASVDHKE 170


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 421 LKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAA-AAVDRLT 597
           ++S K  + +  K  D+L K K  EL  +KK +    +  +  HV +  AA  +   ++ 
Sbjct: 69  IRSSKQTLINKVKAQDELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIV 128

Query: 598 DTSKY 612
           D  KY
Sbjct: 129 DEKKY 133


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 375 WKENNNNGHGYSLQ 416
           WKE NNNG G+ ++
Sbjct: 640 WKEANNNGRGWKIK 653


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 339 LRERDGFSIGLGISKFGKRLEGFL 268
           L   D F++ + +SK GK   GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 454 QKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTG 618
           Q + +   +  ++E D I+KK+T+  QP       K  A   +  + TD  K +G
Sbjct: 98  QSYNEPYMQRHRIE-DAIEKKMTSETQPSTDEKGRKVSATENSAPKKTDKEKSSG 151


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 436 LGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPA 570
           L +DDY+KF +DL K +  +      + + C Q  I   +  S A
Sbjct: 340 LNVDDYRKFREDLWKKRHGKRKVY--QCSNCSQTFINEDIQNSSA 382


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 121 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 249
           R+  T A N ++  ++ TQ     KLEN      S  +SSKS+
Sbjct: 862 RETRTSASN-ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSD 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.124    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,410
Number of Sequences: 5004
Number of extensions: 50505
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)