Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0891
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 33 0.26
07_01_0161 + 1132505-1132704,1132839-1134075 28 5.6
01_06_0751 + 31690411-31690443,31692900-31694240 28 5.6
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 7.4
08_02_0455 - 17344362-17344418,17344480-17344623,17344693-17344836 28 7.4
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 7.4
06_01_0136 + 1043888-1044487 28 7.4
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107... 27 9.7
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 27 9.7
01_07_0162 + 41576824-41577438 27 9.7
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 32.7 bits (71), Expect = 0.26
Identities = 26/96 (27%), Positives = 47/96 (48%)
Frame = +1
Query: 352 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 531
M+ A I + TD ++ + K +K D+ + +D K + +E DE+++++ C
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199
Query: 532 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFD 639
P +H TKS ++ + D S T S QRF+
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRFE 234
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/96 (23%), Positives = 47/96 (48%)
Frame = +1
Query: 352 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 531
M+ A I + TD ++ + K +K D+ + ++ K + +E DE+++++ C
Sbjct: 121 MEAALEISSRWPPVTDASL-LRWRKKLKRTSDECSQVMER-CKRRAMEDDEMEQEVRQCA 178
Query: 532 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFD 639
P +H T+S ++ + D S T S Q+F+
Sbjct: 179 FPKRIAHATRSFLSSFTGQKKVD-SLITTSTIQKFE 213
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 400 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 579
TAI F ++ +LG D K +D L +N K +DE+ + P S T+ P
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217
Query: 580 AVDRLTDTS 606
A ++ T TS
Sbjct: 218 ATEQATSTS 226
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 248 RIAPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG 352
R+ P ++ S R P + IP P++ PS+ AT G
Sbjct: 11 RLGPSAAKSTSARVPGV-IPKPIDLPSQRGTATQG 44
>08_02_0455 - 17344362-17344418,17344480-17344623,17344693-17344836
Length = 114
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 19 SISAATKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKL 198
S + T S+ R +ATD I+S+ + K ++++T+ AAV + + D +
Sbjct: 22 SSTTGTPRPSITRPNATDHFTKCITSNPHFKEFQQQLTTKLGEASAAVTMASSLLLDAFV 81
Query: 199 EN 204
++
Sbjct: 82 DS 83
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 124 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 231
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
>06_01_0136 + 1043888-1044487
Length = 199
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 632 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 549
R C VY +V+ N+S AAAA+ + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197
>05_07_0277 -
28909502-28909621,28910053-28910583,28910629-28910721,
28910758-28911501
Length = 495
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 446 SMPSFTDLSFLK*--IAVSVVVIFFPSITLACFIHLSLCESVMAFPSDLGS 300
S+ F DL++L +SVV F +T + LS CE ++ SDLG+
Sbjct: 120 SIKDFHDLNYLNLSYTNISVVPNFLGVVTSLEVLDLSHCEKLVEIHSDLGN 170
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 421 LKSVK--LGIDDYQKFLDDLAKNKKVELDEIKKKL 519
LKS++ + IDD QK +DD A+ K + DEI L
Sbjct: 109 LKSIQNEINIDDVQKLMDDTAEAKAYQ-DEINAAL 142
>01_07_0162 + 41576824-41577438
Length = 204
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 513 EVDNLRPTGNYITRYKITGSRSGRRSIDRHEQIYW 617
E+ R TG + Y+IT R RR+ D E +W
Sbjct: 132 EMGQQRSTGWMMAEYEITDPRCYRRADDGEEDDFW 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.124 0.334
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,188
Number of Sequences: 37544
Number of extensions: 340598
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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