Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0891
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_50667| Best HMM Match : LIM (HMM E-Value=0.95) 29 3.3
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 29 4.3
SB_38051| Best HMM Match : LIM (HMM E-Value=0.34) 29 4.3
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_32881| Best HMM Match : DUF75 (HMM E-Value=1.7) 28 7.5
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08) 28 7.5
SB_12992| Best HMM Match : LIM (HMM E-Value=0.16) 28 7.5
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07) 28 7.5
SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51) 28 7.5
SB_23497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 59.7 bits (138), Expect = 2e-09
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Frame = +1
Query: 346 KWMKQAKVIDGKKITTTDTAIHFKK--LKSV---KLGIDDYQKFLDDLAKNKKVELDEIK 510
K + K+ D KK T D+ I F + +KS K+ ++ L A+ K + +++
Sbjct: 34 KLFRDLKIYD-KKFTQIDSDIIFNRPEVKSKSERKVNFSQFKAALSLCAEKKYGKREDVI 92
Query: 511 KKLTT-CGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETG 648
K + C G + T A AVDRLTDT KYTGSH++RFDETG
Sbjct: 93 KLVDKICEGKGPVASKTTKVVKAGAVDRLTDTRKYTGSHKERFDETG 139
>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Frame = +1
Query: 379 KKITTTDTAIHFKKLK-----SVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTT-C-GQP 537
+K T+TDT I F + + K+ + ++ L A+ K D++ K C G+
Sbjct: 388 QKFTSTDTDIIFSRTEVKPKTERKINFNQFKVALGLCAEKKFGSKDQVGKLTEKICKGKG 447
Query: 538 GITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETG 648
TS TK+ V+RLTDT YTGSH++RFD++G
Sbjct: 448 PATSGATKA-VKVGGVERLTDTKCYTGSHKERFDKSG 483
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Frame = +1
Query: 175 QEVKDVKLENGNAPGASNGTSSKSE----DXXXXXXXXXXXXXXXGDPKSDGKAITLSQ- 339
++ K+VK + G ++GTS KSE + P+ K I S+
Sbjct: 483 EKKKEVKKKKGKEKSTTSGTSKKSEAEIQEKKEIKVEEAKPVAKSDKPQESVKDIERSEV 542
Query: 340 -----SD-KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID--DYQKFLDDLAKNKKVE 495
+D K ++A +I+ +K++ + + K + VK+ + D +++L +N+++E
Sbjct: 543 YQKLATDYKNTEKALLIEQEKLSEMEKELENSKDEKVKIEQEKADLDIAIENLKRNQEIE 602
Query: 496 LDEIKKKL 519
L+E+K +
Sbjct: 603 LEELKDNI 610
>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTD 600
E +KK T CG + TKS A ++DRL D
Sbjct: 915 ETEKKCTVCGAQLLLQGYTKSHAQCFSIDRLDD 947
>SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
+ +KK T CG P + TKS ++DRL D+
Sbjct: 899 DAEKKCTVCGTPLLFQGYTKSHPQCFSIDRLDDS 932
>SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)
Length = 318
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
++ KK T CG + TKS ++DRL DT
Sbjct: 264 DVDKKCTVCGTQLLLQGYTKSHLQCFSIDRLDDT 297
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 251 IAPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG*NKPKLLMERK 385
I L+RK RFPN P+++ S R + G N P + K
Sbjct: 238 IVKSLARKTCERFPNPIAVFPLDRRSNGRDISRGRNTPGMQRNTK 282
>SB_38051| Best HMM Match : LIM (HMM E-Value=0.34)
Length = 168
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKY 612
+ +KK T CG + TKS ++DRL D+ Y
Sbjct: 114 DAEKKCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQVY 150
>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1627
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 53 NACPLPIRLHI*YHHTNTLNTYK--EKCLLKHRIR 151
N CPLP+ L + Y H T +Y EK +L+ ++
Sbjct: 574 NRCPLPLYLRLAYDHAVTWKSYTPLEKSVLEKNVQ 608
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 397 DTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKL 519
D+ F++L LG+DD + ++D N K D KKKL
Sbjct: 400 DSEQMFQQLNHEVLGVDDDEDSVNDEENNSKTGNDLYKKKL 440
>SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 52 KRLSAT-DSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK 195
K + AT SLA + +Y+ +++ST + + + QVT+++ DVK
Sbjct: 321 KEMQATKQSLALLKQDKEYLNKQVQELSTRSSLAEEQLGQVTKQLNDVK 369
>SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +1
Query: 232 TSSKSEDXXXXXXXXXXXXXXXGDPKSDGKAITLSQSDKWMKQA-KVIDGKKITTTDTAI 408
T +K+ED PKS KA DK K+ K D K +T + +
Sbjct: 8 TPTKTEDRVPAKKRKLSETKLKSSPKS-AKATPSKTGDKQRKKTPKDQDTNKGSTDNADV 66
Query: 409 HFKKLKSVKLGIDDYQKFLDDLAKNKKVE 495
K+ K KL DY F +L + ++
Sbjct: 67 EIKRDKQGKLVFPDYPDFKPNLTPKEVMQ 95
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 301 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 480
+PKS T + K + K G+K HFKK V G D ++ + D +
Sbjct: 461 EPKSKSNISTFDKKQK-SRLRKFSKGRKDDILKAKRHFKKGHKVSEGADAHESYEDSRSS 519
Query: 481 NKKV 492
++ V
Sbjct: 520 SENV 523
>SB_32881| Best HMM Match : DUF75 (HMM E-Value=1.7)
Length = 462
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQR 633
+ +KK T CG + TKS ++DRL D+ + + R +
Sbjct: 418 DAEKKCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQGLSCNRRHK 461
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 316 GKAITLSQSDKWMKQAKVIDGKKIT--TTDTAIHFKKLKSVKLGID-DYQKFLDDLAKNK 486
GK I + + KW+ I +K T IH K++ VKL ID D +K LD ++K
Sbjct: 68 GKVIQVYRK-KWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSK 126
Query: 487 KVE 495
E
Sbjct: 127 LAE 129
>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
Length = 833
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 375 INNFGLFHPFVALRERDGFSIGLGISKFGKR 283
IN F +H F++ +RDGF LG F R
Sbjct: 262 INLFNFYHEFLSGGKRDGFHEALGEIAFNAR 292
>SB_12992| Best HMM Match : LIM (HMM E-Value=0.16)
Length = 411
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
+ KKK T CG + TKS ++DRL D+
Sbjct: 357 DAKKKCTVCGTQLLFQGYTKSHPQCFSIDRLDDS 390
>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
Length = 766
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 424 KSVKLGIDDYQKFLDDLAKNKKVELDE 504
K V++ D+ + FLD LAK K+E DE
Sbjct: 719 KLVRVSSDENELFLDYLAKRAKLERDE 745
>SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
E +KK T CG + TKS ++DRL D+
Sbjct: 676 EAEKKCTVCGAQLLLQGYTKSHPQCFSIDRLDDS 709
>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
Length = 1039
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
+++KK T CG + TKS ++DRL D+
Sbjct: 985 DVEKKCTVCGTQLLFQGYTKSHPQCFSIDRLDDS 1018
>SB_23497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
E +KK T CG + TKS ++DRL D+
Sbjct: 181 EAEKKCTVCGTQLLFQGYTKSHPQCFSIDRLDDS 214
>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 502 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 603
+ +KK T CG + TKS ++DRL D+
Sbjct: 834 DAEKKCTVCGTQRLLQGYTKSHPQCFSIDRLDDS 867
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.309 0.124 0.334
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,345,351
Number of Sequences: 59808
Number of extensions: 393759
Number of successful extensions: 1095
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -