Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0891
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 34 0.071
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin... 30 1.2
At4g22100.1 68417.m03195 glycosyl hydrolase family 1 protein con... 29 2.0
At4g10390.1 68417.m01705 protein kinase family protein contains ... 29 2.0
At2g39580.1 68415.m04855 expressed protein 29 2.0
At2g22795.1 68415.m02704 expressed protein 29 2.7
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,... 29 2.7
At1g65340.1 68414.m07409 cytochrome P450, putative similar to cy... 29 2.7
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 29 3.5
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi... 29 3.5
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 3.5
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.5
At3g11720.1 68416.m01437 expressed protein 29 3.5
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 28 4.7
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 28 6.1
At5g58410.1 68418.m07314 expressed protein contains similarity t... 27 8.1
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 27 8.1
At4g19490.2 68417.m02867 expressed protein 27 8.1
At4g19490.1 68417.m02866 expressed protein 27 8.1
At3g58260.1 68416.m06495 meprin and TRAF homology domain-contain... 27 8.1
At3g28720.1 68416.m03586 expressed protein 27 8.1
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con... 27 8.1
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 27 8.1
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 34.3 bits (75), Expect = 0.071
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 346 KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKK 516
KW K+ ++ TT H + KLG+DD QKF+D + K + + ++ KK
Sbjct: 41 KWAALEKLPTFARLRTTIIHPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKK 97
>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
this genomic sequence region is unfinished, the
annotated gene may be missing a stop codon or start
codon
Length = 487
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 373 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDL 474
DG+K + DT +H +K+ + + D Y K+ +D+
Sbjct: 56 DGRKPSVWDTFLHCRKMDNGDIACDGYHKYKEDV 89
>At4g22100.1 68417.m03195 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to hydroxyisourate hydrolase
(GI:19569603) [Glycine max]; furostanol glycoside
26-O-beta-glucosidase F26G,Costus speciosus,
PATCHX:S78099
Length = 507
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 373 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIK 510
DG+K + DT +H + L + + D Y K+ +D+ + LD +
Sbjct: 49 DGRKPSVWDTFLHTRNLSNGDITSDGYHKYKEDVKLMVETGLDAFR 94
>At4g10390.1 68417.m01705 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 342
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 427 SVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRL 594
SV + D ++FLD +++DE+K L+ I+S ++ P+AA D L
Sbjct: 272 SVDISEDKVRQFLDPRLLRDSLDIDEVKTMLSVAA-VCISSKLSLRPSAAQVADTL 326
>At2g39580.1 68415.m04855 expressed protein
Length = 1567
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 10 TAGSISAATKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKD 189
T ++S +T S + + S A + S+KYI R +S +AQ + VE + +++D
Sbjct: 157 TKKALSTSTFSHAATSKVSNLSFAKEMKSNKYIHSSERTVSKDAQRPEQIVESNSNKLQD 216
Query: 190 VK 195
+K
Sbjct: 217 LK 218
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 133 TEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKS 246
T+ Q+ ++ + QEVKDV+ + P + NG S++S
Sbjct: 693 TQEQSDSSSDTNLPQEVKDVRTDLETLPDSGNGGSNES 730
>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase SP:P45582 from
[Asparagus officinalis]
Length = 815
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 92 HHTNTLNTYKEKCLLKHRIRMPLWSK 169
H N+L ++ CL K R +P+WSK
Sbjct: 769 HSPNSLAVVQKACLKKSRCSVPVWSK 794
>At1g65340.1 68414.m07409 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 503
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +1
Query: 499 DEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLT-----DTSKY 612
D++ +K+ T + I SH T P+ A+D LT DT+KY
Sbjct: 250 DQLLEKIITAKREEINSHGTHHPSRGEAIDVLTYYMTMDTTKY 292
>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 133 TEAQNTDAAVEQVTQEVKDVKL 198
TE N D +E V Q++KD KL
Sbjct: 265 TEESNVDEVIESVKQQIKDAKL 286
>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 883
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +1
Query: 16 GSISAATKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK 195
G SA ++A +K+L + L + + + I + + +TE+ A + K K
Sbjct: 99 GYKSALQQTADVKQLLELEEL--LKDARREIDGILKSHATESPQETPAYHSEKSDEKSDK 156
Query: 196 LENGNAPGASNGTSSKS 246
L+N + +SNG S +S
Sbjct: 157 LDNHESGASSNGNSHES 173
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 142 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 249
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 523 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 558
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 142 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 249
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 281 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 316
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 160 VEQVTQE--VKDVKLENGNAPGASNGTSSKSED 252
V ++ +E V D+K EN ++P +S+ +SS SED
Sbjct: 348 VPEIEEEECVDDLKEENKSSPSSSSSSSSSSED 380
>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|P47823
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Oryctolagus
cuniculus}; contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 100 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKL 198
K IK + TE N D E V Q+VKD KL
Sbjct: 254 KEIKAVLTSQVTEEINVDEVTEMVKQQVKDAKL 286
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 7 ATAGSISAATKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQ 177
+T+G SAA S+ L+ L + D +AY + +++ L +S A N D V+ +T+
Sbjct: 428 STSGLSSAAVTSSLLESLQSEDLVAYGLIP-EFVGRLPILVSLSALNEDQLVQVLTE 483
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 331 LSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQ-KFLDDLAKNKKVELDEI 507
LS++ W++ ++++DG K+ + ++ F K V + IDD + L + K K + +++
Sbjct: 588 LSKAFPWIRSSELLDGVKLLSVSVSV-FGPRKVVPVLIDDIETSTLLSVEKEKNMSPEKL 646
Query: 508 KK 513
K
Sbjct: 647 IK 648
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 294 IWRSQVRWKSHHALAKRQMDETSQSY*WKENNNNGH 401
+W RW+SHH +A+ ++ + +K N + H
Sbjct: 34 LWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIH 69
>At4g19490.2 68417.m02867 expressed protein
Length = 1054
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 463 LDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYT 615
+D +A++ ++ DEI KL + + +H+ P +R DT+K T
Sbjct: 897 IDKVAQDFRIHRDEIYTKLVQIMRERLLAHLHGLPKVVEGWNRPPDTNKQT 947
>At4g19490.1 68417.m02866 expressed protein
Length = 1054
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 463 LDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYT 615
+D +A++ ++ DEI KL + + +H+ P +R DT+K T
Sbjct: 897 IDKVAQDFRIHRDEIYTKLVQIMRERLLAHLHGLPKVVEGWNRPPDTNKQT 947
>At3g58260.1 68416.m06495 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 321
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 421 LKSVKLGIDDYQKFLDDLAKNKKVELDEIK 510
+KSV +D +K LD+L + KK E D+I+
Sbjct: 226 MKSVGFKLDWLEKKLDELFEKKKEEADKIR 255
>At3g28720.1 68416.m03586 expressed protein
Length = 687
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 466 LETSGSRRCRVLPI*VF*SE*PCPLLLFSFHQ 371
+E G+ RVLP+ VF + PLLL +HQ
Sbjct: 424 VEEEGNEFARVLPVYVFDLDINTPLLLDRYHQ 455
>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 512
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 373 DGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIK 510
DG+K + DT H + + + D Y K+ DD+ LD +
Sbjct: 51 DGRKPSLWDTLCHSRDQGNGDIACDGYHKYKDDVKLMVDTNLDAFR 96
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 LIFQGSLQGVFQIWRSQVRWK-SHHALAKRQMDETS 362
L+F GS G ++W+ ++R K + H+L + + + S
Sbjct: 189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQES 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.124 0.334
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,055
Number of Sequences: 28952
Number of extensions: 268453
Number of successful extensions: 623
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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