Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0890
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   1.6  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   5.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/65 (26%), Positives = 22/65 (33%)
 Frame = -1

Query: 327  NGSPASWMTYPSITCVSMFGFTIALGSPLSCAAAWLI*RGVHCVLLNIVDVPEATDAVVT 148
            NG P  W      TC  +  F +   S L  A+     R V CV         AT     
Sbjct: 880  NGKPTCWRECDKATCEKL--FRMKKSSALRPASGGTTARVVRCVCAGSTGTRRATGCGRV 937

Query: 147  EVIVD 133
            E + +
Sbjct: 938  ESVAE 942


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 214 SYQPSRCTRQRAPQSYGEAEH 276
           S+Q    +R++APQS+ + +H
Sbjct: 76  SFQGKHKSRRKAPQSFEDIQH 96


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 545 QPYECRLC 568
           +PYEC+LC
Sbjct: 104 KPYECKLC 111



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 545 QPYECRLC 568
           +PY CRLC
Sbjct: 76  RPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 545 QPYECRLC 568
           +PYEC+LC
Sbjct: 360 KPYECKLC 367



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 545 QPYECRLC 568
           +PY CRLC
Sbjct: 332 RPYRCRLC 339


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 290 SRASVCSASP*LWGALCR 237
           +R ++C +SP L GA C+
Sbjct: 60  NRINLCDSSPCLNGATCQ 77


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 89  SFAAHCSPQKWSCL 48
           +F  HC+   W CL
Sbjct: 151 NFMLHCNNTTWRCL 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,898
Number of Sequences: 336
Number of extensions: 3020
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)