Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0890
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 0.43
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 28 1.3
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 27 2.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 26 5.3
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 26 5.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 7.0
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 9.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 9.2
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 169 FRYINYVQEHA-MYSASYQPSRCTRQRAPQSY-GEAEHTDARDRRICH 306
+R NY + Y SY+PSR R+ +P +Y E + D+R RR H
Sbjct: 211 YRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRKERYNVDSRPRRERH 258
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 383 VCFLCLLCQPIRVEVGSPRMVL 318
VCFL L C +R GSP +VL
Sbjct: 223 VCFLLLACAFLRTSDGSPNVVL 244
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 177 VPEATDAVVTEVIVDADTEDVVTSCG 100
VPE ++ V V VD DT+D++ S G
Sbjct: 85 VPEVSELEVDRVNVDQDTKDMLKSLG 110
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = -1
Query: 279 SMFGFTIALGSPLSCAAAWLI*RGVHCVLLNIVDVPE--ATDAVVTEVIVDADTEDVVTS 106
S F ++L S L ++ + ++ ++ D E + DAV+T +I+ +T +V +S
Sbjct: 514 STFSKEVSLNSSLRWYCVAILVTPLQLIINHLKDKTEMLSLDAVMT-LILGKNTREVNSS 572
Query: 105 CGRIGVVCCALLATEVELFDTLGDTEEGV 19
+ + C E +F+T EG+
Sbjct: 573 IEELKITDCLSFLLEHNIFNTFLVYNEGI 601
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 284 HVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLE 427
+V+ V+Q EP R +RE D DKE +L +DE + + L+
Sbjct: 175 NVVLFVVVQLILEPRKRKRLVREAVDHIDKERELEINDELKKISEKLD 222
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 296 GYVIQEAGEPFAVNRPLREWADKEDKENKL 385
G+V+ +++PLR+W+ +E ENKL
Sbjct: 242 GFVVASKDASIDLSKPLRKWSPEE--ENKL 269
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 289 HVRQYVRLHHSFGEPFVVCSGLADMTRSTLRALE 188
H+R+++R H+ +PFV G R LR E
Sbjct: 437 HLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHE 470
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 295 RICHPGGGRTIRGEPTSTRMG*QRRQRKQTAQFGRAS 405
+IC P GG TI GEP G + Q R S
Sbjct: 19 KIC-PSGGETIHGEPDGFSTGNGGKGANQAVAVARLS 54
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 320 EPFAVNRPLREWADKEDKENKLPSSDEPPRKKQ 418
EP +NR L ED + L S + KKQ
Sbjct: 258 EPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 DVPEATDAVVTEVIVDADTED 118
D+PE VT++I D+D ED
Sbjct: 28 DLPEVGTTSVTKIINDSDNED 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,898
Number of Sequences: 5004
Number of extensions: 50565
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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