Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0890
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0097 + 25796725-25796857,25797366-25797495,25798273-257988... 36 0.036
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 30 1.3
02_01_0013 - 85332-85637 29 2.4
04_04_1388 - 33179270-33180679 29 4.1
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 29 4.1
01_06_1722 - 39431480-39431626,39431760-39431882,39431986-394321... 28 5.4
11_06_0504 + 24376580-24377017 28 7.2
10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361... 28 7.2
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 28 7.2
11_06_0647 + 25870470-25870744,25870765-25871533 27 9.5
06_01_1171 - 10007714-10009141 27 9.5
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 27 9.5
04_04_0821 - 28349662-28350027 27 9.5
>02_05_0097 +
25796725-25796857,25797366-25797495,25798273-25798842,
25799604-25799650,25799908-25799976,25801437-25801699
Length = 403
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 275 ILTHVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRK 412
+ HV+E +EAG+ VN P W ++K N LP SD+ P +
Sbjct: 304 VAVHVLED---REAGKEKGVNAPDSRWGQPDEKTNLLPRSDKRPNQ 346
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/122 (23%), Positives = 50/122 (40%)
Frame = +1
Query: 226 SRCTRQRAPQSYGEAEHTDARDRRICHPGGGRTIRGEPTSTRMG*QRRQRKQTAQFGRAS 405
S+C R+ P+ +A+ T +D + P G +I +S+ ++ A G S
Sbjct: 161 SKCARKAEPKRAKKAKQTVEKDASVAIPNGSCSISDNDSSS--------SQEVADAGATS 212
Query: 406 T*KADAGRRRQFAPYKF**R*PRQRIFNTKRQCEXXXXXXXXXXXXSTLRVPTLHKLRYL 585
K+ AGR P R R+RI N + + ST+ +H +++L
Sbjct: 213 KGKSRAGRGAATDPQSLYARKRRERI-NERLKTLQNLVPNGTKVDISTMLEEAVHYVKFL 271
Query: 586 TL 591
L
Sbjct: 272 QL 273
>02_01_0013 - 85332-85637
Length = 101
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 206 TPRHISQAAAHDKGLPKAMVKPNILTHVIE--GYVIQEAGEPFAVNRPLREWADKEDKEN 379
T RH+ + D G+P V IL+ VIE + + + + L+ W +
Sbjct: 33 TIRHMIEDKCADNGIPLPNVNSKILSKVIEYCNKHVHASADDSTSSADLKNWTPTSSRST 92
Query: 380 KLPSS 394
+ PSS
Sbjct: 93 RPPSS 97
>04_04_1388 - 33179270-33180679
Length = 469
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 377 FLCLLCQPIRVEVGSPRMVLPPPG 306
F C QP+ E+G PR+V P G
Sbjct: 122 FFCGWMQPLAAEIGVPRVVFTPSG 145
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 226 SRCTRQRAPQSYGEAEHTDARDR 294
S+CT+ AP S AE T ARD+
Sbjct: 1183 SQCTKIEAPNSLASAETTSARDK 1205
>01_06_1722 -
39431480-39431626,39431760-39431882,39431986-39432131,
39432249-39432457,39432539-39432633,39433307-39433369,
39433828-39433905,39434009-39434125,39434496-39434567,
39434675-39434776,39434874-39435048,39435171-39435226,
39435887-39435967
Length = 487
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 195 LLNIVDVPEATDAVVTEVIVDADTEDVVTSCGRIGVVCCALLATEVEL 52
++ +V V A A +E++ DA +SCG + +VCC L+ T EL
Sbjct: 323 IMALVHVMVALRAPYSEIVKDASN----SSCG-LKLVCCLLICTLTEL 365
>11_06_0504 + 24376580-24377017
Length = 145
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 359 DKEDKENKLPSSDEPPRKKQMLEGGASLPR 448
D ED++NK+P+ PP +++ G ++ +
Sbjct: 106 DDEDEDNKVPARVAPPGRRRRFRNGVAVKK 135
>10_01_0002 -
34139-34234,34337-34345,34806-35048,35931-36003,
36184-36265,36398-36580,36663-36702,36814-36886,
37022-37290
Length = 355
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = -1
Query: 171 EATDAVVTEVIVDADTE-----DVVTSCGRIGVVCCALLATEVELFDTLG 37
+AT IV+ D E D+V++ G +V C++ A+E ++ D G
Sbjct: 124 DATSPAERLEIVECDLEKQAQSDIVSAIGNAAIVVCSIGASEKDILDVTG 173
>06_02_0068 +
11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 519 EASAFTLAFCVEDSLTWLSLLELIRGKLAPP 427
++S + F VEDS + +LE++ GKL+ P
Sbjct: 539 QSSIMSGTFLVEDSPYYFCMLEIVLGKLSKP 569
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 25 LLGISKCVKQLHFCGEQ 75
LLG+S+ ++ L FCG+Q
Sbjct: 105 LLGVSRAIEYLQFCGQQ 121
>06_01_1171 - 10007714-10009141
Length = 475
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 377 FLCLLCQPIRVEVGSPRMVLPPPG 306
F C QP+ E G PR+V P G
Sbjct: 127 FFCGWTQPLAAEAGVPRLVFVPSG 150
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 302 VIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLEG 430
V++ PF NRP + ++ + LP + EP R ++EG
Sbjct: 609 VVEHTTVPFLPNRPSTKSHNRIEPMTTLPRNFEPARVVPLMEG 651
>04_04_0821 - 28349662-28350027
Length = 121
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 296 GYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLEGGAS 439
G ++ + GE ++++P K+ K+NK P+SD P + EG A+
Sbjct: 11 GRLVFKGGEAASLHKP-----PKKHKKNKKPASDAPADAEADAEGAAA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,442,876
Number of Sequences: 37544
Number of extensions: 389140
Number of successful extensions: 1171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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