Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0890
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 34 0.11
SB_59295| Best HMM Match : SET (HMM E-Value=0) 33 0.15
SB_53363| Best HMM Match : Peptidase_S15 (HMM E-Value=1.49939e-43) 30 1.8
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 29 3.2
SB_40302| Best HMM Match : Peptidase_S15 (HMM E-Value=8e-39) 29 4.2
SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18) 28 5.6
SB_40180| Best HMM Match : Pre-SET (HMM E-Value=0.11) 28 5.6
SB_45658| Best HMM Match : Sushi (HMM E-Value=0) 28 7.4
SB_11802| Best HMM Match : SNURF (HMM E-Value=5.3) 27 9.7
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 151 DHSVRSFRYINYVQEHAMYSASYQPSRCTRQRAPQSYGEAEH 276
D +SFR+ + H + + +P RCT QS+G +H
Sbjct: 1143 DQCGKSFRHSRSLARHELLHSGQRPYRCTEPECEQSFGRQDH 1184
>SB_59295| Best HMM Match : SET (HMM E-Value=0)
Length = 1230
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 183 VDVPEATDAVVTEVIVDADTEDVVTSCGRIGVVCCALLATEVELFDTLG-DTEEGVESAT 7
+D+ + + + +V+ DA+T++ VT C G V A L +E++ TL +T G+E T
Sbjct: 857 IDIQKTSGSSTIDVVKDANTDEAVTECK--GTVSTAALISEMKPIHTLDVNTSIGLEEDT 914
>SB_53363| Best HMM Match : Peptidase_S15 (HMM E-Value=1.49939e-43)
Length = 461
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 339 DLYANGLTKKTKKTNCPVRTSLHVKSRCWKAAPVCP 446
DLY N + + + CP++ + S CW A V P
Sbjct: 202 DLYTNCVFRMAESLTCPLKAIVGPWSHCWPANGVTP 237
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 453 VLVTITTSANLQHKTPM*RPRPHLTLRWPTLNLTSADSAQAKIPNANKWTVARSVRVH 626
V T +++A +Q T + +P +T PT+N+ A AQA P T+ RS +H
Sbjct: 827 VSTTASSTATIQRDTEIQASKP-VT---PTVNIPRATDAQASKPVTPTATIPRSADIH 880
>SB_40302| Best HMM Match : Peptidase_S15 (HMM E-Value=8e-39)
Length = 621
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 339 DLYANGLTKKTKKTNCPVRTSLHVKSRCWKAAPVCP 446
DLY N + + + CP++ + S CW V P
Sbjct: 129 DLYTNPVFRMAESLTCPLKAIVGPWSHCWPGHGVTP 164
>SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 468 TTSANLQHKTPM*RPRPHLTLRWPTLNLTSADSAQAKIPNANKWTVARSVRVHPQHP 638
+T+ Q KTP P+P W + + S + K+ + R + V P+HP
Sbjct: 277 STALMHQRKTPS-LPKPQWHAPWKLMRIWDLGSGKLKLSLTGHISTVRGLVVSPRHP 332
>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
Length = 1311
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 190 QEHAMYSASYQPSRCTRQRAPQSYGEAEHTDARDRRICHPGGGRTI 327
Q H S+ +PS A S G H D+R R+ G GR++
Sbjct: 976 QAHQASSSHQRPSSVLNSEASFS-GAVHHQDSRHERVAFSGEGRSL 1020
>SB_40180| Best HMM Match : Pre-SET (HMM E-Value=0.11)
Length = 291
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 79 AANDPYSTAAGDNVFCVCIHNDFGDHSVRSFRYINYVQEHAMYSASYQPSRCTRQRAPQS 258
AA + + AAG+ V +C++ D ++ S RY + Q+ + + +P + A
Sbjct: 137 AAKNDIAAAAGERVL-LCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQISAAAI 195
Query: 259 Y 261
Y
Sbjct: 196 Y 196
>SB_45658| Best HMM Match : Sushi (HMM E-Value=0)
Length = 875
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +2
Query: 287 VIEGYVIQEAGEPF--------AVNRPLREWADKEDKENKLPSSDEPPRKK 415
V+EG I E E F ++ RPL +D++D + P SD+ P+KK
Sbjct: 517 VLEGAGISEQSESFLSSEMAGDSMKRPLE--SDEDDDDGASPVSDQKPKKK 565
>SB_11802| Best HMM Match : SNURF (HMM E-Value=5.3)
Length = 214
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 218 ISQAAAHDKGLPKAMVKPNILTHVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSD 397
+S A A K PK+ K + + + + +AGE + +PLRE + + KL +SD
Sbjct: 96 VSLAVALQKPSPKSKEKDH-QEALSKRLALWKAGE---ICKPLREGRILQGRIGKLKTSD 151
Query: 398 EPPRKK 415
P R K
Sbjct: 152 SPERSK 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,514,758
Number of Sequences: 59808
Number of extensions: 430037
Number of successful extensions: 1279
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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