Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0890
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-13|CAA84729.1| 234|Caenorhabditis elegans Hypothetical p... 30 1.6
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 29 3.7
U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical pr... 29 3.7
U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical pr... 29 3.7
U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical pr... 29 3.7
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL110485-17|CAB60365.1| 272|Caenorhabditis elegans Hypothetical... 29 3.7
AL110485-16|CAB60364.1| 295|Caenorhabditis elegans Hypothetical... 29 3.7
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 28 6.5
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 28 6.5
>Z35663-13|CAA84729.1| 234|Caenorhabditis elegans Hypothetical
protein T04A8.10 protein.
Length = 234
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 257 AMVKPNILTHVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQ 418
A +KP I T + G +++ E L+ A K KE+ ++DEPP KKQ
Sbjct: 23 AEIKPKIWTAHVNGKKHRDSIEK------LKTSAQKRGKESSTRNTDEPPNKKQ 70
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 314 AGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLE 427
AG+ F V R +E + +D++ K S+EP K+Q +E
Sbjct: 527 AGDDFEVARSEKE-PEPDDRKRKADGSEEPEAKRQKVE 563
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 238 RQRAPQSYGEAEHTDARDRRICHPGGGRT-IRGEPTSTRMG*QRRQRK 378
R+R Y + + D RDR P G RT R EP R R R+
Sbjct: 56 RERRDDRYRKVDSRDHRDRNRRSPAGSRTYCRDEPDRRRNNHSDRNRR 103
>U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical
protein R151.2c protein.
Length = 318
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 64 CGEQCAANDPYSTAAGDNVFCVCIHNDF 147
CG C A D A D V+ C+H F
Sbjct: 225 CGTICMAADKLVEAGADKVYAFCVHGIF 252
>U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical
protein R151.2b protein.
Length = 319
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 64 CGEQCAANDPYSTAAGDNVFCVCIHNDF 147
CG C A D A D V+ C+H F
Sbjct: 226 CGTICMAADKLVEAGADKVYAFCVHGIF 253
>U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical
protein R151.2a protein.
Length = 377
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 64 CGEQCAANDPYSTAAGDNVFCVCIHNDF 147
CG C A D A D V+ C+H F
Sbjct: 284 CGTICMAADKLVEAGADKVYAFCVHGIF 311
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 64 CGEQCAANDPYSTAAGDNVFCVCIHNDF 147
CG C A D A D V+ C+H F
Sbjct: 353 CGTICMAADKLVEAGADKVYAFCVHGIF 380
>AL110485-17|CAB60365.1| 272|Caenorhabditis elegans Hypothetical
protein Y46G5A.22b protein.
Length = 272
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 181 NYVQEHAMYSASYQPSRCTRQ-RAPQSYGEAEHTDARDR 294
N + EH+ Y+ S P RC++ R +S ++ TDA R
Sbjct: 125 NTISEHSTYTYSTHPERCSQAGRTSRSNSYSDATDATYR 163
>AL110485-16|CAB60364.1| 295|Caenorhabditis elegans Hypothetical
protein Y46G5A.22a protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 181 NYVQEHAMYSASYQPSRCTRQ-RAPQSYGEAEHTDARDR 294
N + EH+ Y+ S P RC++ R +S ++ TDA R
Sbjct: 125 NTISEHSTYTYSTHPERCSQAGRTSRSNSYSDATDATYR 163
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 314 AGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLEGGASLPR 448
A ++N+ E K K S P KK ML GGAS+PR
Sbjct: 735 AASLMSLNKIANETIIKPGGLMKSNSLSNEPWKKVMLNGGASMPR 779
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 314 AGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLEGGASLPR 448
A ++N+ E K K S P KK ML GGAS+PR
Sbjct: 763 AASLMSLNKIANETIIKPGGLMKSNSLSNEPWKKVMLNGGASMPR 807
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,093
Number of Sequences: 27780
Number of extensions: 303611
Number of successful extensions: 924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -