Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0890
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar ...    31   0.49 
At5g12410.1 68418.m01459 THUMP domain-containing protein contain...    30   1.1  
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    29   3.4  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    29   3.4  
At5g25950.1 68418.m03085 hypothetical protein various predicted ...    27   7.9  

>At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar to
           variable surface lipoprotein Vsp422-3 (GI:15384285)
           [Mycoplasma bovis]; similar to glycine-rich protein
           atGRP-6, Arabidopsis thaliana, PIR:T49893
          Length = 225

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 305 IQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLEG 430
           + E+G+    + PL+E  DK  + +KLP  D+P ++  +L+G
Sbjct: 105 LAESGKQSGGDNPLKE--DKPPERDKLPRKDKPSKEDNLLKG 144


>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
           Pfam profile PF02926: THUMP domain
          Length = 376

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 359 DKEDKENKLPSSDEPPRKKQMLEGGASLPRI 451
           ++EDK N+    DEPPRKK   E    L ++
Sbjct: 162 EEEDKGNQKNGGDEPPRKKTCTEEANPLAKV 192


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 290 IEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQMLE 427
           I+  +  E G P   NR +  W DK+DK++K    D    K +  E
Sbjct: 101 IDSELNDEYGNPIWKNR-VESWKDKKDKKSKKKKKDPKATKAEQHE 145


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = -2

Query: 74  CSPQKWSCLTHLE 36
           CSP+K+SCLTH++
Sbjct: 607 CSPEKYSCLTHVK 619


>At5g25950.1 68418.m03085 hypothetical protein various predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 413

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 369 TKKTNCPVR-TSLHVKSRCWKAAPVCPV 449
           TKKT  P   +S H+KS+ W  +  CP+
Sbjct: 79  TKKTTIPNNGSSEHIKSQIWSKSGKCPM 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,799
Number of Sequences: 28952
Number of extensions: 280881
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)