Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0889
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   4.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.0  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   9.2  

>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 579 TKTEVLRESGQSIPGRELKLTLLSMAMVLSIEQKSFFCC 463
           +K  V  E  + IP REL      + + LS   KS F C
Sbjct: 318 SKNSVKLEENRKIPERELWNYFFQLTIALSYLHKSGFAC 356


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 128  RPHVVDLTVSNLN*YVYGSDIRPEILRYLGSAYFVF 235
            RP+V+   VS+        ++ P +++YLG  Y V+
Sbjct: 2522 RPNVISTLVSSFVKCAAKLELPPHLVKYLGKLYGVY 2557


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 170 YVYGSDIRPEILRYLGSAYFVFICI 244
           YVYG  +    L+YL   YF+  C+
Sbjct: 55  YVYGFGVLKSYLKYLLPLYFLASCL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,468
Number of Sequences: 5004
Number of extensions: 46251
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)