Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0889
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714...    28   5.4  
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    28   5.4  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    28   7.2  

>03_02_0786 -
           11169820-11170158,11170245-11170433,11171173-11171469,
           11171568-11171630,11171884-11171997,11173011-11173091,
           11173176-11173307,11174265-11174363,11174453-11174530,
           11174641-11174901
          Length = 550

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 271 NFTFFIGVTYTDKNKICRPQISQDFRPNI-GPVYILVKVTNSKI 143
           N  FF G+ Y     IC   + +DF  ++   +Y   K T+S I
Sbjct: 462 NVVFFWGLMYRTSTNICIDSVKEDFMKSVTNDIYGKEKCTHSDI 505


>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
            24510294-24510362,24510428-24510502,24510584-24510688,
            24511309-24511407,24511521-24513230,24513489-24513788,
            24514748-24514846,24514962-24515079,24515166-24515251,
            24515334-24515402,24515746-24515843,24516373-24516534,
            24516779-24516787,24516970-24516991,24517620-24517712,
            24517872-24517940,24518720-24518782,24518882-24519037,
            24520895-24521230
          Length = 1355

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 616  RKIFQQMVTVTTNKNRSTKRIWTKY 542
            R+  QQ+VT +TN + S   IWTKY
Sbjct: 1143 REALQQLVTASTNNDNS---IWTKY 1164


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 73  DTPNHYYIHCSGKS 114
           DTP+ YY+HC+G S
Sbjct: 52  DTPSAYYLHCNGGS 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,453
Number of Sequences: 37544
Number of extensions: 254560
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)