Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0889
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        28   5.6  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  28   7.4  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   28   7.4  
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  27   9.7  

>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 402 LFCHAKVILLLLCSEAAVIAKKSGCIKE 319
           LF H    LLL CS+ +    +S C+KE
Sbjct: 7   LFSHVTAFLLLRCSDGSTAPLRSECVKE 34


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 604 QQMVTVTTNKNRSTKRIWTKYS 539
           Q  +++T N NR  K+IW+K S
Sbjct: 685 QVPISITVNNNRDAKKIWSKES 706


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 233 FICICYANEKGEINRFRMMIVRCLTFNCS 319
           F+C+ Y   +  +   R++   CL +NCS
Sbjct: 28  FVCLNYNCSRASVYDLRVLFFVCLNYNCS 56


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 233 FICICYANEKGEINRFRMMIVRCLTFNCS 319
           F+C+ Y   +  +   R++   CL +NCS
Sbjct: 28  FVCLNYNCSRASVYDLRVLFFVCLNYNCS 56


>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 50  VNFVY*IKIPQIITTYIVQENQNNVLR--PHVVDLTVSNL 163
           V FV+ I + QI+T  I Q N+N   R  P+ ++  +SNL
Sbjct: 12  VVFVFRI-VSQIVTILIFQRNENRHFRLAPYFINTAISNL 50


>SB_43699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 482 CSIDNTIAIDNNVNFSSLPGILC-PDSLSTSVFVGCYCYHLLKNLSSNRVARW 637
           CSI       NNV++     +L     + T  F     YH ++NLS    ARW
Sbjct: 176 CSITWYTTDHNNVSYIICVSVLFFLIPIVTMTFCFASIYHTIRNLSHEATARW 228


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 211 ISQDFRPNIGPVYILVKVTNSKINDMRPEDVVLIFLNNV 95
           ++Q F P    + ++VKVT +  +D+   D  + F+NN+
Sbjct: 58  LNQYFDPQRAHIRLVVKVTKANGDDLTAGDDTIGFVNNI 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,508
Number of Sequences: 59808
Number of extensions: 324588
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)