Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0889
         (639 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    27   0.38 
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   6.2  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   8.2  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 230 VFICICYANEKGEINRFRMMI 292
           VF C CYA    E+ RF +M+
Sbjct: 80  VFFCSCYAPPSWELERFHVML 100


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 233 FICICYANEKGEINRFRMMIVRCLTFNCS 319
           F  +CY   + E+ +  M+  RC   N S
Sbjct: 87  FRSVCYYVSESEMEKIEMLFARCSVGNNS 115


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +2

Query: 20  EKYVIRLITYVNFVY*IKIPQIITTYIVQENQNNVLRPHVVDLTVSNLN*YVYGSDIRPE 199
           +KY +    +++ +Y + +  ++   +VQ  ++ +L P  V      L   + G  + P+
Sbjct: 625 QKYQLIAAFFISAIYSLVMMAVLVGIVVQVMEDGILAPSSVFFLAVALQIVITGV-LHPQ 683

Query: 200 ILRYL--GSAYFVFICICY 250
            +  L  G  Y++ I   Y
Sbjct: 684 EMEALPAGLVYYITIPSMY 702


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,710
Number of Sequences: 2352
Number of extensions: 11882
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)