Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0889
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...    29   3.7  
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...    29   3.7  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81585-8|CAO82068.1|  308|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 175 IRVRYSAGNLEIFGVCIFCFYLYM 246
           I  +Y    LEIFG+C  C Y Y+
Sbjct: 107 IGFQYQMFMLEIFGICAICSYTYL 130


>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 187 IGPVYILVKVTNSKINDMRPEDVVLIFLNNVCSNDLGYLNLIHKIHICY*SDDIFL 20
           +G  Y L++    K   +RPED +  F+NNV    +  +  +++ H     +D+FL
Sbjct: 57  VGQFYFLIR----KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHH---EEDLFL 105


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 187 IGPVYILVKVTNSKINDMRPEDVVLIFLNNVCSNDLGYLNLIHKIHICY*SDDIFL 20
           +G  Y L++    K   +RPED +  F+NNV    +  +  +++ H     +D+FL
Sbjct: 57  VGQFYFLIR----KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHH---EEDLFL 105


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 311 NCSSFMHPLFFAITAASEHKSSKITFA*QNKFRGLLSNAYT 433
           NCS     L+F           +  FA QNKF+G+L   +T
Sbjct: 520 NCSMVCGDLYFNANTDLTEDQLRTYFAKQNKFKGMLKFEHT 560


>Z81585-8|CAO82068.1|  308|Caenorhabditis elegans Hypothetical
           protein T05E12.9 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 71  KIPQIITTYIVQENQNNVLRPHVVDLT 151
           ++P ++ TYI +ENQ  + R   +D+T
Sbjct: 195 ELPNLLYTYIDEENQLKIARKFKIDVT 221


>AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical
           protein Y54G2A.29 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 530 SLPGILCPDSLSTSVFVGCYCY 595
           SL   LC   LS+SV VGCY +
Sbjct: 455 SLADNLCEGGLSSSVLVGCYTH 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,435,001
Number of Sequences: 27780
Number of extensions: 257193
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)