Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0889
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    29   3.4  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    28   6.0  
At3g25220.1 68416.m03150 FK506-binding protein 2-1 (FKBP15-1) / ...    27   7.9  

>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 212 LGSAYFVFICICYANEKGEINRFRMMIVRCLTF 310
           LG A F+F+C CY    G+ N F  + ++ ++F
Sbjct: 488 LGFAAFLFVCGCYDFVHGKNNYFIYLFLQTMSF 520


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 292 NHHPKTINFTFFIGVTYTDKNKICRPQISQ 203
           N H   I+FT  +GV Y+ +  ICR  ISQ
Sbjct: 292 NRHDHRISFTHHLGVGYS-RCGICRKDISQ 320


>At3g25220.1 68416.m03150 FK506-binding protein 2-1 (FKBP15-1) /
           immunophilin / peptidyl-prolyl cis-trans isomerase /
           rotamase identical to SP|Q38935 FK506-binding protein
           2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans
           isomerase) (PPiase) (Rotamase) (15 kDa FKBP) (FKBP-15-1)
           {Arabidopsis thaliana}, immunophilin (FKBP15-1)
           GB:U52046 [Arabidopsis thaliana] (Proc. Natl. Acad. Sci.
           U.S.A. 93 (14), 6964-6969 (1996))
          Length = 153

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 378 LLLLCSEAAVIAKKSGCIKELQLKVKHR 295
           LLLL       AKKSG + ELQ+ VK++
Sbjct: 14  LLLLTILTLAYAKKSGDVTELQIGVKYK 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,561
Number of Sequences: 28952
Number of extensions: 227088
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)